Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c07r
(343 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy... 71 7e-14
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.1
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 26 1.8
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 25 2.4
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 25 2.4
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 2.4
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 3.2
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 3.2
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 4.3
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 24 5.6
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 24 7.5
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 24 7.5
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 24 7.5
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 23 9.8
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 23 9.8
>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 70.5 bits (165), Expect = 7e-14
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Frame = -2
Query: 261 FKQVADKVRXWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVE---SAKWKAWNGRKG 91
F+Q A V+ K P+ DE L LY+L+KQAT+GD N +P GL++ KW AW KG
Sbjct: 5 FEQAAADVKELKETPNSDELLKLYALFKQATVGDNNTEKP-GLLDLKGKFKWNAWEELKG 63
Query: 90 ISQDDAKKQYIENAEKLHSKY 28
S++DA +YI ++L +KY
Sbjct: 64 KSKEDAASEYISFVDELKTKY 84
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 1.1
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 20 IYAYLEWSFSAFS-MYCFLASSWEMP 94
++ +L W + + +YCF SSW+ P
Sbjct: 4043 LFFFLSWLHATLAEIYCFTCSSWKEP 4068
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 1.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 149 AMLTSPMVACLYREYSARFSSSLGLVFQXLTLSA 250
AML+SP + ++YS F S ++ Q L ++A
Sbjct: 73 AMLSSPFTEAIGKKYSIAFFSGCYIIGQILLVTA 106
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 2.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 98 RPFHAFHLALSTRPLGWAMLTSPMV 172
+ FHA L L +RP G+ + +P++
Sbjct: 302 KKFHAVRLTLRSRPAGFGLRCNPIL 326
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 2.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 192 YSLYKQATIGDVNIAQPSGLVESAKW 115
Y L+ + + D+N A+ +VESAKW
Sbjct: 150 YKLF-DSYVYDINTAEQERVVESAKW 174
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 2.4
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = -3
Query: 275 LSXSNSNRSPIRLGXGRPSPVTMRTLRCTPCTSRLP*VMLTLPSPAVLWRAPSG------ 114
+S +++N SP R +P T+ L P P + +P+ +P
Sbjct: 385 VSRNSNNNSPEGYDNNRTNP-TVNNLPSYPTNLARPKAIKPMPTSIHGQTSPLSPIPPVH 443
Query: 113 -RHGTVAKASPKTMPRSNTSKMRRNSTPNTHKL 18
HG V+ P +P ++ MR +STP +H L
Sbjct: 444 TTHGLVSDIRP--LPSVSSPIMRADSTPISHNL 474
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.0 bits (52), Expect = 3.2
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -3
Query: 140 AVLWRAPSGR--HGTVAKASPKTMPRSNTSKMRRNSTPNT 27
AVL R PSG GT+A P ++ N S RRNS+ ++
Sbjct: 453 AVLNR-PSGETCSGTLALYRPNSLALKNQSSHRRNSSTSS 491
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.0 bits (52), Expect = 3.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 33 WSGVSPHFR-CIASWHRLGRCLCDRSM 110
W SP+ R I +HRLGR L +R +
Sbjct: 457 WRLASPNIRFLITLYHRLGRILRERKL 483
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 4.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 154 HCPAQRSCGERQVEGMERSQRHLPRRCQE 68
+CPAQR G V G S+R + + +E
Sbjct: 486 YCPAQREYGRLNVVGTLMSKRKIMKLVKE 514
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 24.2 bits (50), Expect = 5.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 122 PSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTHKLLL 12
P H V+ SP T +N S+ NS+P KLL+
Sbjct: 44 PYSDHARVSN-SPNTHRENNPSRSTDNSSPFLIKLLI 79
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 23.8 bits (49), Expect = 7.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 149 AMLTSPMVACLYREYSARFSSSLGLVFQXLTLSA 250
AML+SP + ++YS F S + ++ + L ++A
Sbjct: 73 AMLSSPFTERIGKKYSICFFSGVYIIAELLLVTA 106
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 23.8 bits (49), Expect = 7.5
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -3
Query: 290 DNTKCLSXSNSNRSPIRLGXGRPSPVTMRTLRCTPCTSRLP*VMLTLPSPA 138
D+ K LS ++S R G RP+ +L S L V L LPSP+
Sbjct: 519 DDLKYLSPNSSPRFVASDGPNRPASNGRSSLFSRGRASNLGDVGLRLPSPS 569
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 23.8 bits (49), Expect = 7.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 236 GXGRPSPVTMRTLRCTPCTSRL 171
G R +P + TL TP TSRL
Sbjct: 483 GKKRVAPQLLTTLSATPSTSRL 504
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 23.4 bits (48), Expect = 9.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 68 SNTSKMRRNSTPNTHKL 18
SN+SKM RN++ N +L
Sbjct: 1130 SNSSKMTRNTSKNNRRL 1146
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +2
Query: 32 LEWSFSAFSMYCFLASSWEMPLRPFH 109
LEW FS++ +++ + + PFH
Sbjct: 114 LEWLIRRFSIHEYVSDEFILSFLPFH 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,545,947
Number of Sequences: 5004
Number of extensions: 31134
Number of successful extensions: 88
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -