Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c07f
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    22   1.9  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   4.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   4.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   4.5  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   4.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     20   7.8  

>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +1

Query: 211 CGERQVEGMERSQRHL----PRRCQEAIHRKCGETPLQIRINYYLE 336
           C E+  EG+ +  RHL    P   QE   +   +   + R N++LE
Sbjct: 74  CNEKHKEGVRKVIRHLIKNKPSWWQELQEKYDPKGEYKSRYNHFLE 119


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 246 AKASPKTMPRSNTSKMRRNSTP 311
           +K SP T   + T+    NSTP
Sbjct: 4   SKFSPSTTTTTTTTSSALNSTP 25


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 246 AKASPKTMPRSNTSKMRRNSTP 311
           +K SP T   + T+    NSTP
Sbjct: 4   SKFSPSTTTTTTTTSSALNSTP 25


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 234 HGTVAKASPKTM-PRSNTSKMRRNSTPNTHKLL 329
           +GT+AK SPK + P  + +     +TPN   L+
Sbjct: 481 NGTLAKLSPKVLEPLYSGNLAVSVATPNDTSLV 513



 Score = 20.2 bits (40), Expect = 7.8
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = -2

Query: 254 CLCDRSMPSTWR 219
           C C+   P+ WR
Sbjct: 876 CKCENGKPTCWR 887


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 295 RIFDVLLLGIVLGDAFATVP 236
           RI+D +  G+V GD    +P
Sbjct: 314 RIYDAIHSGVVRGDNGQNIP 333


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 150 SARFSSSLGLVFQFLTLSATCXNC 79
           +ARF+   G  ++F  ++A   NC
Sbjct: 269 TARFTVEQGYRYRFRVINAGFLNC 292


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,005
Number of Sequences: 336
Number of extensions: 2139
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)