Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c07f
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    69   2e-12
08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369...    67   4e-12
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86...    59   1e-09
03_06_0582 - 34891613-34891795,34892407-34892466,34893134-348932...    42   2e-04
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468...    39   0.002
07_01_0703 - 5295561-5297523,5299344-5299462                           29   1.0  
04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455           29   1.8  
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266...    28   3.1  
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237...    28   3.1  
08_02_0818 - 21524539-21524664,21524911-21524961,21525800-215261...    27   4.1  
05_02_0150 - 7111090-7111225,7111251-7111458,7111705-7111774,711...    27   4.1  
02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262...    27   4.1  
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936           27   5.5  
03_01_0463 + 3551764-3551897,3551989-3552046,3552148-3552255,355...    27   7.2  
11_04_0348 - 16632102-16632188,16632326-16632391,16632487-166325...    26   9.5  
07_03_0191 - 14920321-14920511,14920844-14921177                       26   9.5  
04_01_0081 - 890347-890603,890871-891204                               26   9.5  

>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
 Frame = +2

Query: 65  MSLDEQFXQVADKVRNWKTKPSDDENLALXSLYKQATIGDVNIAQPSGLV--ESAKWKAW 238
           M L E F + A+KV+      S+++ L L  LYKQAT+GDVN ++P      + AKW AW
Sbjct: 1   MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVNTSRPGIFAQRDRAKWDAW 60

Query: 239 NGRKGISQDDAKKQYIENAEKLHSKYA 319
              +G S+++A   YI   ++L  + A
Sbjct: 61  KAVEGKSKEEAMSDYITKVKQLQEEAA 87


>08_01_0417 -
           3692247-3692329,3692442-3692504,3693233-3693350,
           3694084-3694095
          Length = 91

 Score = 67.3 bits (157), Expect = 4e-12
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
 Frame = +2

Query: 65  MSLDEQFXQVADKVRNWKTKPSDDENLALXSLYKQATIGDVNIAQPSGLV--ESAKWKAW 238
           M L E F Q A+K +      S++  L L  LYKQAT+GDVN A+P      + AKW AW
Sbjct: 1   MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTARPGIFAQRDRAKWDAW 60

Query: 239 NGRKGISQDDAKKQYIENAEKL 304
              +G S+++A   YI   ++L
Sbjct: 61  KAVEGKSKEEAMSDYITKVKQL 82


>06_01_0108 -
           860080-860162,860276-860338,860857-860974,861481-861492
          Length = 91

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
 Frame = +2

Query: 65  MSLDEQFXQVADKVRNWKTKPSDDENLALXSLYKQATIGDVNIAQPS--GLVESAKWKAW 238
           M L E+F + A+K +      S+++ L L  LYKQAT+G V   +P    L +  KW AW
Sbjct: 1   MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVTTGRPGIFNLKDRYKWDAW 60

Query: 239 NGRKGISQDDAKKQYIENAEKL 304
              +G S+++A   YI   ++L
Sbjct: 61  KAVEGKSKEEAMADYITKVKQL 82


>03_06_0582 -
           34891613-34891795,34892407-34892466,34893134-34893280,
           34893502-34893657,34893745-34893828,34893907-34893995,
           34894575-34894689,34894776-34894899,34895080-34895219,
           34895868-34895929,34896042-34896108,34896185-34896295,
           34896868-34896945,34897074-34897274,34897492-34897563,
           34897630-34897693,34898084-34898154,34898328-34898474
          Length = 656

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +2

Query: 131 DDENLALXSLYKQATIGDVNIAQPSGL--VESAKWKAWNGRKGISQDDAKKQYIENAEK 301
           +D  L L  LY+QAT+G  N+ +P     VE +KW +W+G   +   +A + +++  E+
Sbjct: 37  NDVALLLYGLYQQATVGPCNVPKPRAWNPVEQSKWTSWHGLGSMPSAEAMRLFVKILEE 95


>04_04_1623 -
           34846056-34846223,34846547-34846644,34846738-34846829,
           34847096-34847202,34847385-34847490,34848108-34848547
          Length = 336

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 119 TKPSDDENLALXSLYKQATIGDVNIAQPSG--LVESAKWKAWNGRKGISQDDAKKQYIEN 292
           T   +   L L  LYK AT G     QPS   L   AKW AW+    +  ++A ++YI  
Sbjct: 109 TSVPEQAQLQLYGLYKIATEGPCTAPQPSALKLKARAKWNAWHKLGAMPTEEAMQKYITV 168

Query: 293 AEKLHSKYA 319
            ++L   ++
Sbjct: 169 VDELFPNWS 177


>07_01_0703 - 5295561-5297523,5299344-5299462
          Length = 693

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 162 YREXSARFSSSLGLVFQFLTLSAT--CXNCSSRDILCYLXRSGGR 34
           +RE  A+ +  +G + Q   L+    C NCS   +L  L +S GR
Sbjct: 454 FREDDAQLAEEIGDLVQLRVLNVVLNCSNCSEAKVLTELAKSMGR 498


>04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455
          Length = 300

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 6   TVPIGTLQLPYLLISXDNT-KCLSTSNSXRSPIRLGTGRPSP 128
           ++    L + +L+IS  NT K L++  S  SP +LG G P P
Sbjct: 114 SISASLLGIIFLIISLRNTNKGLTSLQSSSSPTKLGDGLPLP 155


>05_04_0342 -
           20425141-20425311,20425415-20425558,20426506-20426622,
           20426719-20426835,20427533-20427678,20428208-20428293,
           20428780-20428889
          Length = 296

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = +3

Query: 192 LPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTHKLLLRIK*ISYLNYALS 371
           +P PA     PSG H +    SP   P S   +          KL   ++ + + N  L+
Sbjct: 5   IPPPAFFQFLPSGAHSSPHHQSPLRSPASERERYLAELLAERQKLAPFMQVLPFCNRLLN 64

Query: 372 HDFLK 386
            + L+
Sbjct: 65  QEILR 69


>03_05_0440 +
           24322332-24322388,24323478-24323615,24323654-24323736,
           24325038-24325128,24326091-24326189,24326356-24326418,
           24327182-24327259,24329354-24329543,24329812-24330065,
           24330159-24330531,24331193-24331276,24332085-24332371,
           24332495-24332542,24333194-24333220,24333951-24333987,
           24334063-24334250,24334343-24334521,24334595-24334877,
           24335481-24335717,24335798-24335988,24336552-24336561,
           24336844-24336984,24337073-24337288,24338437-24338727,
           24338852-24339025
          Length = 1272

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +2

Query: 134 DENLALXSLYKQATIGDVNIAQPSGLVES 220
           DE+ AL +L+  A +  VNI QPS +VES
Sbjct: 476 DESSALDALHTLADLS-VNILQPSSIVES 503


>08_02_0818 -
           21524539-21524664,21524911-21524961,21525800-21526170,
           21526497-21526852,21527926-21527996
          Length = 324

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +2

Query: 92  VADKVRNWKTKP----SDDENLALXSLYKQAT 175
           V D++  W   P    +D+EN +  +LYK+AT
Sbjct: 241 VKDRIEEWYRPPWDRTADEENASFNALYKEAT 272


>05_02_0150 -
           7111090-7111225,7111251-7111458,7111705-7111774,
           7112290-7112367
          Length = 163

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = +3

Query: 183 MLTLPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTH 320
           M+   SP   W AP G  G +A+  P+             S  NTH
Sbjct: 35  MVINSSPKHTWFAPVGNKGALARIQPQVTELEGKVTSLSTSMENTH 80


>02_01_0365 +
           2621302-2621711,2622442-2622620,2623381-2623496,
           2623626-2623964,2624113-2624307,2624505-2624594,
           2625288-2625518,2625632-2625952
          Length = 626

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +2

Query: 107 RNWKTKPSDDENLALXSLYKQATIGDVNIAQPSGLVESAKWKAWNGRKGISQDDAK-KQY 283
           R  K K  +DE+  +  + K+A    + I Q   L+++     WNG    S++  K ++ 
Sbjct: 90  RKHKQKRKNDESDEVSRMEKRARYLLIKIKQEQNLLDAYSGDGWNGH---SREKIKPEKE 146

Query: 284 IENAEKLHSKYA*IIT*N*INFLLKLCSFS 373
           ++ A+K   KY   I    +   L LCS S
Sbjct: 147 LQRAKKQIMKYK--IAIRDVIHQLDLCSSS 174


>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
          Length = 838

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -3

Query: 328 NNLCVFGVEFLRIFDVLLLGIVLGDAFATVP-CLPLGALHKTAGLGNVNITYGSLLVQGV 152
           NN C F  + L++F   L    L  +FA    C  LG   +T  L +V    G+ L  G 
Sbjct: 76  NNYCKFDDQRLQLFTSSLYLAALAASFAASRLCTRLGR-RRTMQLASVFFLGGTALCAGA 134

Query: 151 QRKVLIVTG 125
               +++ G
Sbjct: 135 ANLAMLIVG 143


>03_01_0463 +
           3551764-3551897,3551989-3552046,3552148-3552255,
           3552664-3552721,3552788-3553014,3553085-3553145,
           3553311-3553615
          Length = 316

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 20/93 (21%), Positives = 37/93 (39%)
 Frame = +2

Query: 32  TLPPDLXR*HKMSLDEQFXQVADKVRNWKTKPSDDENLALXSLYKQATIGDVNIAQPSGL 211
           T+ PD         DE +   A++   +  KP+    +   SLY  AT    ++     +
Sbjct: 189 TVFPDAEARLSQPKDETWSDCAEQ--GFAVKPTKGSAVLFFSLYPNATFDPGSLHGSCPV 246

Query: 212 VESAKWKAWNGRKGISQDDAKKQYIENAEKLHS 310
           ++  KW A       S D+  ++  +  E  H+
Sbjct: 247 IQGEKWSATKWIHVRSYDENGRRSSDKCEDQHA 279


>11_04_0348 -
           16632102-16632188,16632326-16632391,16632487-16632571,
           16632951-16633044,16633417-16633474,16633767-16633807,
           16633919-16634018
          Length = 176

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +2

Query: 176 IGDVNIAQPSGLVESAKWKAWNGRKGISQDDAKKQYIENAEKLHSKY 316
           +G VN+     +    K+  +  ++ ++ D+A+   IE AEK+H+++
Sbjct: 75  LGKVNVMYEDDMELMVKFYQFVAKEEMAIDEAELDPIEFAEKIHAQH 121


>07_03_0191 - 14920321-14920511,14920844-14921177
          Length = 174

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +3

Query: 192 LPSPA-VLWRAP---SGRHGTVAKASPKTMPRSNTSKMRRNSTP 311
           L  PA V WR P   SGRH T   A     P + T  +R    P
Sbjct: 46  LSDPAQVWWRCPLPASGRHATTVAALAALSPDTMTHPLRLRPLP 89


>04_01_0081 - 890347-890603,890871-891204
          Length = 196

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +3

Query: 192 LPSPA-VLWRAP---SGRHGTVAKASPKTMPRSNTSKMRRNSTP 311
           L  PA V WR P   SGRH T   A     P + T  +R    P
Sbjct: 46  LSDPAQVWWRCPLPASGRHATTVAALAALSPDTMTHPLRLRPLP 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,397,236
Number of Sequences: 37544
Number of extensions: 245961
Number of successful extensions: 775
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)