Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c07f
(399 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003140-9|AAB54171.1| 86|Caenorhabditis elegans Acyl-coenzyme... 73 1e-13
Z68004-6|CAA91987.2| 116|Caenorhabditis elegans Hypothetical pr... 68 2e-12
Z46794-8|CAA86779.1| 385|Caenorhabditis elegans Hypothetical pr... 54 5e-08
U00063-1|AAK18960.1| 146|Caenorhabditis elegans Acyl-coenzyme a... 52 1e-07
AL023828-1|CAA19448.1| 115|Caenorhabditis elegans Hypothetical ... 52 2e-07
Z92826-2|CAB07319.1| 266|Caenorhabditis elegans Hypothetical pr... 46 8e-06
U27312-8|AAZ32809.1| 219|Caenorhabditis elegans Hypothetical pr... 38 0.002
U28732-6|AAB04903.2| 489|Caenorhabditis elegans Hypothetical pr... 30 0.70
U28732-5|AAT92075.1| 495|Caenorhabditis elegans Hypothetical pr... 30 0.70
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 29 0.93
U41274-5|AAA82461.2| 571|Caenorhabditis elegans Nematode astaci... 29 1.6
AF125971-2|AAN73291.1| 458|Caenorhabditis elegans Hypothetical ... 28 2.1
AC024214-14|AAU87808.1| 644|Caenorhabditis elegans Hypothetical... 28 2.8
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr... 27 3.7
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ... 27 3.7
AC024202-12|AAF36031.2| 143|Caenorhabditis elegans Hypothetical... 27 3.7
AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical ... 27 6.5
Z71261-2|CAA95805.1| 813|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical pr... 26 8.7
AF016669-3|AAB66097.1| 275|Caenorhabditis elegans Hypothetical ... 26 8.7
>AF003140-9|AAB54171.1| 86|Caenorhabditis elegans Acyl-coenzyme a
binding proteinprotein 1 protein.
Length = 86
Score = 72.5 bits (170), Expect = 1e-13
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = +2
Query: 83 FXQVADKVRNWKTKPSDDENLALXSLYKQATIGDVNIAQPS--GLVESAKWKAWNGRKGI 256
F A V+ KT PS+DE L L +L+KQ T+GD +P L AKW AW+ +KG+
Sbjct: 5 FDDAAATVKTLKTSPSNDELLKLYALFKQGTVGDNTTDKPGMFDLKGKAKWSAWDEKKGL 64
Query: 257 SQDDAKKQYIENAEKLHSKY 316
++DDA+K Y+ E+L +KY
Sbjct: 65 AKDDAQKAYVALVEELIAKY 84
>Z68004-6|CAA91987.2| 116|Caenorhabditis elegans Hypothetical
protein F47B10.7 protein.
Length = 116
Score = 68.1 bits (159), Expect = 2e-12
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 6/91 (6%)
Frame = +2
Query: 65 MSLDEQFXQVADKVRNW-KTKP---SDDENLALXSLYKQATIGDVNIAQPS--GLVESAK 226
MSL E+F + ++ KT P S+D+ L SL+KQA+IGDVN +P ++E K
Sbjct: 1 MSLQEKFDAAVEIIQKLPKTGPVATSNDQKLTFYSLFKQASIGDVNTDRPGIFSIIERKK 60
Query: 227 WKAWNGRKGISQDDAKKQYIENAEKLHSKYA 319
W +W +G+SQD+AK++YI+ + K A
Sbjct: 61 WDSWKELEGVSQDEAKERYIKALNDMFDKIA 91
>Z46794-8|CAA86779.1| 385|Caenorhabditis elegans Hypothetical
protein R06F6.9 protein.
Length = 385
Score = 53.6 bits (123), Expect = 5e-08
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +2
Query: 68 SLDEQFXQVADKVRNWKTKPSDDENLALXSLYKQATIGDVNIAQPS--GLVESAKWKAWN 241
S F + ++ K +P +D L L L+KQAT GDV +P V AK+ AWN
Sbjct: 24 SAQADFEKAQKNLKTLKEEPDNDVKLQLYGLFKQATAGDVQGKRPGMMDFVGRAKYDAWN 83
Query: 242 GRKGISQDDAKKQYIENAEKLHSKYA 319
KG +QD+A+ Y + L S+ A
Sbjct: 84 TLKGQTQDEARANYAKLVGGLISEEA 109
>U00063-1|AAK18960.1| 146|Caenorhabditis elegans Acyl-coenzyme a
binding proteinprotein 4 protein.
Length = 146
Score = 52.4 bits (120), Expect = 1e-07
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Frame = +2
Query: 68 SLDEQFXQVADKV----RNWKTKPSDDENLALXSLYKQATIGDVNIAQPS--GLVESAKW 229
SLDEQF + +N K S ++ L + SLYKQAT G + QP + + KW
Sbjct: 4 SLDEQFEAAVWIINALPKNGPIKTSINDQLQMYSLYKQATSGKCDTIQPYFFQIEQRMKW 63
Query: 230 KAWNGRKGISQDDAKKQYIENAEKL 304
AWN + + +AK QY+E KL
Sbjct: 64 NAWNQLGNMDEAEAKAQYVEKMLKL 88
>AL023828-1|CAA19448.1| 115|Caenorhabditis elegans Hypothetical
protein Y17G7B.1 protein.
Length = 115
Score = 52.0 bits (119), Expect = 2e-07
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Frame = +2
Query: 83 FXQVADKVRNWKTKPSDDENLALXSLYKQATIGDVN----IAQPSG-LVESAKWKAWNGR 247
F A+++R K++P+D E L L +LYKQA GD+ P+G V K+ AW +
Sbjct: 15 FEIAAEEMRRLKSEPTDRERLKLYALYKQALHGDIPNEDVYPVPAGDEVGRKKYAAWKSQ 74
Query: 248 KGISQDDAKKQYIENAEKLHSKY 316
KG + + + Y+ AE++ KY
Sbjct: 75 KGANSEKCRADYVAIAEEMIKKY 97
>Z92826-2|CAB07319.1| 266|Caenorhabditis elegans Hypothetical
protein C18D11.2 protein.
Length = 266
Score = 46.4 bits (105), Expect = 8e-06
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 122 KPSDDENLALXSLYKQATIGDVNIAQPS--GLVESAKWKAWNGRKGISQDDAKKQYIEN 292
K S DE L +L+KQAT G ++ +PS + KW AWN ++ D+AK+ Y+++
Sbjct: 21 KTSTDEKLNFYALFKQATHGKCDLPKPSFYDIQGVYKWNAWNKLDNMTMDEAKQAYVDS 79
>U27312-8|AAZ32809.1| 219|Caenorhabditis elegans Hypothetical
protein F26A1.15 protein.
Length = 219
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 14/63 (22%)
Frame = +2
Query: 158 LYKQATIGDVNIAQPSGLV--------------ESAKWKAWNGRKGISQDDAKKQYIENA 295
LY+QA +GDVN+ + + + + KW AWN +G+++++A +QY+E
Sbjct: 126 LYQQAIVGDVNVPKLNYMEIDEGEKSWMWRWINGNEKWHAWNKCRGLTKEEASEQYVEAV 185
Query: 296 EKL 304
+KL
Sbjct: 186 QKL 188
>U28732-6|AAB04903.2| 489|Caenorhabditis elegans Hypothetical
protein F45E1.7a protein.
Length = 489
Score = 29.9 bits (64), Expect = 0.70
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 189 TLPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKM---RRNSTPNTHK 323
TLPS AV + H V K+SPK+ S+TS + NST N +K
Sbjct: 339 TLPSVAV---NTASSHEDVGKSSPKSSSESDTSTFDSRKHNSTANKYK 383
>U28732-5|AAT92075.1| 495|Caenorhabditis elegans Hypothetical
protein F45E1.7b protein.
Length = 495
Score = 29.9 bits (64), Expect = 0.70
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 189 TLPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKM---RRNSTPNTHK 323
TLPS AV + H V K+SPK+ S+TS + NST N +K
Sbjct: 345 TLPSVAV---NTASSHEDVGKSSPKSSSESDTSTFDSRKHNSTANKYK 389
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 29.5 bits (63), Expect = 0.93
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 90 RSPIRLGTGRPSPVTMRTLRXTPCTSRLP*VMLTLPSPAVLWRAP 224
++P + T RP P T T+R P P TLP + RAP
Sbjct: 112 QAPTTIRTTRPPPAT--TIRTIPFVQTTPATFATLPPAPAVTRAP 154
>U41274-5|AAA82461.2| 571|Caenorhabditis elegans Nematode astacin
protease protein15 protein.
Length = 571
Score = 28.7 bits (61), Expect = 1.6
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +3
Query: 117 RPSPVTMRTLRXTPCTSRLP*VMLTLPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMR 296
+P P + R T T+R ++TLP + R+P+ T KA+P T S TS
Sbjct: 473 KPPPTEIPDNRPTVVTTR---PLVTLPPAVIRSRSPAPPVSTTTKAAPTT---STTSAAP 526
Query: 297 RNSTP 311
+ TP
Sbjct: 527 YSPTP 531
>AF125971-2|AAN73291.1| 458|Caenorhabditis elegans Hypothetical
protein Y4C6B.4a protein.
Length = 458
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 309 EWSFSAFSMYCFLA-SSWEMPLRPFHAFHLALSTRPLGW 196
+WSF S C L W + + FH ++S + LGW
Sbjct: 182 QWSFYFHSATCLLIFCCWVLIYQDDPTFHKSVSVKELGW 220
>AC024214-14|AAU87808.1| 644|Caenorhabditis elegans Hypothetical
protein Y77E11A.12b protein.
Length = 644
Score = 27.9 bits (59), Expect = 2.8
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = -3
Query: 250 FATVPCLPLGALHKTAGLGNVNITYGSLLVQGVQRKVLIVTGLGLPVPNL 101
+ +VP L LG + G N N LL QG +L GLG PNL
Sbjct: 7 YLSVPMLNLGQRRSSEGYLNAN----DLLSQGGGESLLDSAGLGTSQPNL 52
>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical
protein F26A3.3 protein.
Length = 1632
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +2
Query: 98 DKVRNWK-----TKPSDDENLALXSLYKQATIGDVNIAQPSGLVESAKWKA 235
D +R W +KPSDD + +L +++ + I ++ P VE K+ +
Sbjct: 719 DNLRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSS 769
>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
polymerase relatedEGO-1 protein.
Length = 1632
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +2
Query: 98 DKVRNWK-----TKPSDDENLALXSLYKQATIGDVNIAQPSGLVESAKWKA 235
D +R W +KPSDD + +L +++ + I ++ P VE K+ +
Sbjct: 719 DNLRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSS 769
>AC024202-12|AAF36031.2| 143|Caenorhabditis elegans Hypothetical
protein Y71H2B.1 protein.
Length = 143
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 149 LXSLYKQATIGDVNIAQPSGLVESAKWKAWNGRKGISQDDAKKQYIENAEKLHSKY 316
L +LY QAT+GD + G + W G +Q +A ++YI+ + +KY
Sbjct: 84 LNALYMQATVGDYD-----GNTALKCGQYWKKHSGKTQIEAIREYIKLTNQTLTKY 134
>AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical
protein W10G11.5 protein.
Length = 345
Score = 26.6 bits (56), Expect = 6.5
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +3
Query: 39 LLISXDNTKCLSTSNSXRSPIRL-GTGRPSPVTMRTLRXTPCTSRLP*VMLTLPSPAVLW 215
+L + T +T + P + T P+ VT ++ T +++LP + T P P
Sbjct: 91 ILTTVTTTSTTTTVTTTPIPTTVTSTHIPTTVTTTSIPTTVPSTQLPTTVTTTPIPTTTT 150
Query: 216 RAPSGRHGTVAKASPKTMPR 275
R + K P T PR
Sbjct: 151 RKTTTTTLRPTKPRPMTKPR 170
>Z71261-2|CAA95805.1| 813|Caenorhabditis elegans Hypothetical
protein F21C3.2 protein.
Length = 813
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 293 HFRCIASWHRLGRCLCDRSMPSTWR 219
H+ C A+W R G CL ++ MP R
Sbjct: 758 HYDC-AAWARRGECLKNKWMPENCR 781
>Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical
protein B0001.5 protein.
Length = 553
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 235 MERSQRHLPRRCQEAIHRKCGETPLQIRI 321
M+RS RH RR E H++ +P I +
Sbjct: 349 MDRSTRHATRRVDEFTHKRRSPSPEVINV 377
>AF016669-3|AAB66097.1| 275|Caenorhabditis elegans Hypothetical
protein K10G6.2 protein.
Length = 275
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 346 IYLILSNNLCVFGVEFLRIFDVLLLGIVLGDAFATVPCLPLGALHK 209
I L+LS L +F V+F++ D L VLG +PL L K
Sbjct: 2 IRLVLSIGLLIFNVDFVKSEDPTLSATVLGGDLEPFD-IPLEELEK 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,444,434
Number of Sequences: 27780
Number of extensions: 196909
Number of successful extensions: 610
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -