Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c07f
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   2.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   2.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   3.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.1  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 231 FHLALSTRPLGWAMLTSP 178
           FHL ++T P G A + SP
Sbjct: 363 FHLYINTAPCGDARIFSP 380


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +3

Query: 180 VMLTLPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTHKLLLR 335
           ++ T+P    + +   G+H  ++K   KTM   + +K      PN  +L+ R
Sbjct: 96  ILTTMPLLINVVKYLGGKHKFISKKIKKTMENKDITK---RPLPNESQLIKR 144


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 243  PFHAFHLALSTRPLGWAMLTSPMV 172
            PF + H  L+ RPL     T PM+
Sbjct: 1040 PFVSNHDILNLRPLSMEKGTRPMI 1063


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 69  LSTSNSXRSPIRLGTGRPSPVTMRTL 146
           LST+   + P   G  + SPV+M  L
Sbjct: 372 LSTALMSQPPPNFGVSQVSPVSMSAL 397


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +3

Query: 195 PSPAVLWRAPSGRHGTVAKASPKT 266
           P+P   W A +G    +  + P+T
Sbjct: 265 PTPEYRWYAQTGSEPMLVLSGPRT 288


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +3

Query: 195 PSPAVLWRAPSGRHGTVAKASPKT 266
           P+P   W A +G    +  + P+T
Sbjct: 265 PTPEYRWYAQTGSEPMLVLSGPRT 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,752
Number of Sequences: 438
Number of extensions: 2860
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)