Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c06r
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 33 0.029
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 29 0.62
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 29 0.82
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 28 1.4
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 28 1.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 1.9
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 27 1.9
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 2.5
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 2.5
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 2.5
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 3.3
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 27 3.3
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 26 4.4
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 4.4
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos... 26 4.4
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 26 4.4
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 26 4.4
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 4.4
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 26 5.8
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 26 5.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.8
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 33.5 bits (73), Expect = 0.029
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = -3
Query: 524 RDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILE 393
R +N AS R R+ +KLKE Q+E+ A +L E+ L + LE
Sbjct: 271 RRRNTAASARFRIKKKLKEQQLERTAKELTEKVAILETRVRELE 314
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 29.1 bits (62), Expect = 0.62
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 512 YSCLSTLYTLILEWKYLMNFHQCCMWMIVCCLVSWGVGLFF 634
Y+ TL T + +YL++FH ++ ++ +GVGLF+
Sbjct: 510 YAIYLTLSTFVCSSRYLLDFHYLTQ-VVYGYMIGFGVGLFW 549
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 28.7 bits (61), Expect = 0.82
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 133 YVPINRQFFLCVVQVVFI--KDTYYPCQYATCI 225
+VP+NR FL ++ +FI +T +PC + T I
Sbjct: 530 FVPMNRNIFLLLISSLFIIAGNTGFPCFFRTFI 562
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -3
Query: 575 DENSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKAD 402
D + ++ Q + R+ R + E + N KL LQM A+ LEE NKK A+
Sbjct: 77 DGGAPSLKRQTIQKRQARRLDREENATVTAN-KLLALQMRHQAMLLEENNKKATALAN 133
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -3
Query: 440 LEERNKKLR-VKADILEELTKKVKDALMAAILQK 342
++ER+ LR +K ILE++ +KV D L A + +K
Sbjct: 46 VQERDMSLRRIKKPILEKVVEKVLDTLKAEVEEK 79
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 566 SSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERN 426
S + SK ELR KRS+ NRK E+ A+DL+ N
Sbjct: 93 SDIVDAVSSKDEELRKHAKGEGKRSK-NRKRSSKHSEKQAVDLKSSN 138
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/78 (23%), Positives = 40/78 (51%)
Frame = -3
Query: 605 DSTLSSTCSIDENSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERN 426
DS +S ++ ++ SK L + + ++ S + L ++ +EQ EE+
Sbjct: 528 DSAISQQYALVKDDVETLCNSSKISALLESSISSTDNS--GQSLLDIPIEQ-----EEQE 580
Query: 425 KKLRVKADILEELTKKVK 372
+ ++++ D+LEEL +V+
Sbjct: 581 RDMKIQLDLLEELQSRVQ 598
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 605 DSTLSSTCSIDENSSNISTQESKYRELRDK-NNEASKRSRMNRKLKELQMEQLAI 444
D L + CS+ + S N +QE RELRDK N+ S +K++ ++ AI
Sbjct: 701 DIRLYNDCSL-KYSLNTLSQEKILRELRDKLQNDHSSIFDAFQKMRNYMLQHQAI 754
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 548 QESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLE 435
Q+ Y+++ +N AS ++ K++ELQ QL DL+
Sbjct: 183 QQKLYKDMEQEN--ASTIQKLTSKIRELQASQLDHDLQ 218
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 524 RDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILEELTKKV--KDALMAAI 351
+ +N+E ++ ELQ QL+ +E K K +IL EL K+ K+ ++ I
Sbjct: 288 KQQNDEDYTNIMKSKVALELQSSQLSRQIEFSKKDESSKLNILSELESKISEKENELSEI 347
Query: 350 LQK 342
L K
Sbjct: 348 LPK 350
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Frame = -3
Query: 479 KLKELQMEQLAIDLEERNKKLRVK---ADILEEL----TKKVKDALMAAILQK*SK 333
K ++ ++E +IDL+ RN+ ++K A LEE T+K++ + ++QK +K
Sbjct: 3 KKQDNEVELYSIDLKNRNESAKIKLAYAKALEESILCETRKIEQEIKDQVVQKENK 58
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 265 VVDLLSNKMQMLMSFNNTQNIHNLLHFCKIAAINASFTFLVSSS 396
VVDL S K L+ T+++ LL CK ++FT +SSS
Sbjct: 97 VVDLPSKKQNRLLQSCITKHVDRLLDLCKRNL--STFTIDISSS 138
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -3
Query: 548 QESKYRELRDKNNEASKRSRMNRKLKELQMEQ-LAIDLEERNKKLRVKADILEELTK 381
++S L+ K + R+ R+++ L+ +Q L +EERNKK + L EL K
Sbjct: 167 RDSFQSRLKQKKQRSEFRAS-KREMERLERDQELRNKIEERNKKELETIEKLRELAK 222
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -3
Query: 545 ESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILEELTKKVK 372
E K + + ++ S+ S+ ++K+K ++ A + E+ KKL E TK+ K
Sbjct: 14 EGKVPKSLKEESKNSQNSQNSQKIKRTLTDKNASNQEQGTKKLESSVGEQESATKRAK 71
>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 274 LLSNKMQMLMSFNNTQNIHNLLHFCKI-AAINASFTF 381
L +N L +FNN ++ N L+F + AA A FTF
Sbjct: 115 LSNNAHDSLPTFNNGSDLFNPLYFAVLNAATPARFTF 151
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 503 SKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILEE 390
SK++ +N + KEL ++ DLE R K+ A+ LEE
Sbjct: 356 SKKASINLEGKELMVKARIEDLEVRINKITSVANNLEE 393
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -3
Query: 551 TQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAID--LEERNKKLRVKADILEELTK 381
++E++ +L+ + K S NRK + ++ ID LE R ++ R++A+ EEL K
Sbjct: 7 SREARVEKLKKIREQMRKSSHENRKEVVQEHSRMRIDPALERRLERKRMEAE--EELAK 63
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 521 LSTLYTLILEWKY-LMNFHQCCMWMIVCCLVSWGVGLFF 634
+ ++ ++LE + L+ H+C +M++C +V + G+FF
Sbjct: 873 IKDVFNVLLEGRCSLILSHRCFQYMVLCAIVQFS-GVFF 910
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -3
Query: 575 DENSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKAD 402
DE + E+K +E+ + + + + E QL +LEE K+LR+KAD
Sbjct: 16 DEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLE-ELEEETKQLRLKAD 72
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = -3
Query: 596 LSSTCSIDENSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERN 426
+S DE SS + + E D +NE ++ + + L E L + E+N
Sbjct: 910 ISDESETDEESSGLEESDLLDSEDEDIDNEMQLSRELDEEFERLTNESLLTRMHEKN 966
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -3
Query: 581 SIDENSSNISTQESKYRELRDKNNEA-SKRSRMNRKLKELQMEQLAIDLEERNKKLRVKA 405
SIDE +N+S+++ +++ + EA S + KL E+ E+ + +NKK++
Sbjct: 407 SIDEYQNNLSSKDKMVKQVSSQLEEARSSLAHATGKLAEINSER-----DFQNKKIKDFE 461
Query: 404 DILEEL 387
I ++L
Sbjct: 462 KIEQDL 467
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,869
Number of Sequences: 5004
Number of extensions: 48373
Number of successful extensions: 168
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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