Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c06r
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    35   8e-04
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          29   0.041
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          29   0.041
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          29   0.041
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          29   0.041
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          29   0.041
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          29   0.041
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          29   0.041
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    29   0.041
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.2  

>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 34.7 bits (76), Expect = 8e-04
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
 Frame = -3

Query: 569 NSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLE-ERNKKLRVKADILE 393
           N S+ S  + K+++LR+++NE   RSR   +  + + E   I  E ER  +  +K  ILE
Sbjct: 4   NISSYSHHDEKFKQLRNEDNEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE 63

Query: 392 ELTKKVKD 369
              +++++
Sbjct: 64  YELRRIRE 71


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = -3

Query: 569 NSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILEE 390
           N++N S  + ++R+ R +++E   RSR   +    + E +     ER  +   K  ILE 
Sbjct: 4   NTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEY 63

Query: 389 LTKKVKD 369
             ++ ++
Sbjct: 64  ELRRARE 70


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = -3

Query: 569 NSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILEE 390
           N++N S  + ++R+ R +++E   RSR   +    + E +     ER  +   K  ILE 
Sbjct: 4   NTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEY 63

Query: 389 LTKKVKD 369
             ++ ++
Sbjct: 64  ELRRARE 70


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = -3

Query: 569 NSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILEE 390
           N++N S  + ++R+ R +++E   RSR   +    + E +     ER  +   K  ILE 
Sbjct: 4   NTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEY 63

Query: 389 LTKKVKD 369
             ++ ++
Sbjct: 64  ELRRARE 70


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = -3

Query: 569 NSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILEE 390
           N++N S  + ++R+ R +++E   RSR   +    + E +     ER  +   K  ILE 
Sbjct: 4   NTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEY 63

Query: 389 LTKKVKD 369
             ++ ++
Sbjct: 64  ELRRARE 70


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = -3

Query: 569 NSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILEE 390
           N++N S  + ++R+ R +++E   RSR   +    + E +     ER  +   K  ILE 
Sbjct: 4   NTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEY 63

Query: 389 LTKKVKD 369
             ++ ++
Sbjct: 64  ELRRARE 70


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = -3

Query: 569 NSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILEE 390
           N++N S  + ++R+ R +++E   RSR   +    + E +     ER  +   K  ILE 
Sbjct: 4   NTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEY 63

Query: 389 LTKKVKD 369
             ++ ++
Sbjct: 64  ELRRARE 70


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = -3

Query: 569 NSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILEE 390
           N++N S  + ++R+ R +++E   RSR   +    + E +     ER  +   K  ILE 
Sbjct: 4   NTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEY 63

Query: 389 LTKKVKD 369
             ++ ++
Sbjct: 64  ELRRARE 70


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = -3

Query: 569 NSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKKLRVKADILEE 390
           N++N S  + ++R+ R +++E   RSR   +    + E +     ER  +   K  ILE 
Sbjct: 4   NTTNHSHHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEY 63

Query: 389 LTKKVKD 369
             ++ ++
Sbjct: 64  ELRRARE 70


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 521 DKNNEASKRSRMNRKLKELQME-QLAIDLEERN 426
           D+N    K+S++N  L ELQ    + +D+ E++
Sbjct: 301 DENVVTDKKSKVNFALPELQHNLNILVDMCEQD 333


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 460 WNNWQLIWKKEIKN*ELKQIFWKS 389
           W   Q++ KKEIK      I WK+
Sbjct: 244 WEVEQILAKKEIKGVPTYLIKWKN 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,342
Number of Sequences: 438
Number of extensions: 3988
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)