Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c06f
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2R3M6 Cluster: Expressed protein; n=5; Oryza sativa|Re...    35   1.7  
UniRef50_UPI0000F20A06 Cluster: PREDICTED: similar to OTTHUMP000...    33   5.1  
UniRef50_Q5T1Q4 Cluster: Solute carrier family 35 member F1; n=4...    33   6.7  

>UniRef50_Q2R3M6 Cluster: Expressed protein; n=5; Oryza sativa|Rep:
           Expressed protein - Oryza sativa subsp. japonica (Rice)
          Length = 509

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +2

Query: 188 LRPTLGTVSCLGA*RVNISLGAQEEFNQVSKIFYRGTFFFRLVLFVHRPDAQRNVPEGKK 367
           LR +LG  SC+    VN S    +E N   K  Y   FF R+ +  HR D  +     K+
Sbjct: 410 LRASLGLKSCIDKLEVNKSREPNKEIND--KSLYNSLFFLRVYMVAHRDDLIKGYSGAKE 467

Query: 368 S 370
           +
Sbjct: 468 T 468


>UniRef50_UPI0000F20A06 Cluster: PREDICTED: similar to
           OTTHUMP00000017091; n=1; Danio rerio|Rep: PREDICTED:
           similar to OTTHUMP00000017091 - Danio rerio
          Length = 511

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 409 IGMLYIGIS*CLFGFFSFWNVSLR 338
           IG+LYIG S C+FG +SF  V ++
Sbjct: 210 IGLLYIGFSACMFGLYSFMPVVIK 233



 Score = 33.1 bits (72), Expect = 5.1
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 409 IGMLYIGIS*CLFGFFSFWNVSLR 338
           IG+LYIG S C+FG +SF  V ++
Sbjct: 385 IGLLYIGFSACMFGLYSFMPVVIK 408


>UniRef50_Q5T1Q4 Cluster: Solute carrier family 35 member F1; n=47;
           Euteleostomi|Rep: Solute carrier family 35 member F1 -
           Homo sapiens (Human)
          Length = 408

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 409 IGMLYIGIS*CLFGFFSFWNVSLR 338
           IG+LY+G S C+FG +SF  V ++
Sbjct: 282 IGLLYVGFSACMFGLYSFMPVVIK 305


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,830,328
Number of Sequences: 1657284
Number of extensions: 8773973
Number of successful extensions: 19148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19140
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)