Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c06f
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.1
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 27 2.1
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 27 2.7
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 3.6
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 6.3
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 6.3
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 6.3
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 6.3
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 6.3
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 25 8.4
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch... 25 8.4
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 2.1
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = -3
Query: 410 NRYVIYRYIVMFIWIFFLLERFF 342
N+Y + ++++F+W F++L F
Sbjct: 257 NQYTVASWVMLFMWFFYMLTIIF 279
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 436 CSF*TKSNVIGMLYIGIS*CLF 371
CSF ++++G+LY IS C+F
Sbjct: 141 CSFELSADIVGLLYALISTCIF 162
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 387 YRNVYLDFFPSGTFLCAS 334
Y N+Y + PSG + CAS
Sbjct: 112 YENIYATWSPSGNYCCAS 129
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 101 HCSFKFDSFFTKTESHRTLVLKDLHTFIVLRPTLGTVSCLGA*RVNISL 247
H + KFD + + + LVL D+ I + +G V GA + ++L
Sbjct: 1221 HGAIKFDHYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTL 1269
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 440 LVLILNEKQRNRYVIYRYIVMFIWIFFLLERFFAHLVCEQIILTERKKYLYKIF 279
L + ++ ++ + YI +WIF + FF V ILT+R K + F
Sbjct: 102 LCFLSSQSSPQGWINFLYI---LWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF 152
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 440 LVLILNEKQRNRYVIYRYIVMFIWIFFLLERFFAHLVCEQIILTERKKYLYKIF 279
L + ++ ++ + YI +WIF + FF V ILT+R K + F
Sbjct: 102 LCFLSSQSSPQGWINFLYI---LWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF 152
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 297 LFSFG*YYLFTDQMRKETFQKEKNPNKHYDIPIYNIPITLLFVQNE 434
LF F Y ++ K+ F E P K + + N+PI + N+
Sbjct: 520 LFKFENYRNLKNKFLKQPFIGEAKPGKAVYVELRNVPIEIFEYYNK 565
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 440 LVLILNEKQRNRYVIYRYIVMFIWIFFLLERFFAHLVCEQIILTERKKYLYKIF 279
L + ++ ++ + YI +WIF + FF V ILT+R K + F
Sbjct: 102 LCFLSSQSSPQGWINFLYI---LWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF 152
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 440 LVLILNEKQRNRYVIYRYIVMFIWIFFLLERFFAHLVCEQIILTERKKYLYKIF 279
L + ++ ++ + YI +WIF + FF V ILT+R K + F
Sbjct: 102 LCFLSSQSSPQGWINFLYI---LWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF 152
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +1
Query: 115 VRFLFYKNGITSNSSFERLAYIHCTQAYSRD 207
VR + + GIT F+ + Y H Y D
Sbjct: 275 VRLVSFAKGITLAKPFQHITYQHAIDKYGSD 305
>SPBC543.08 |||phosphoinositide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 250
Score = 25.0 bits (52), Expect = 8.4
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 164 KDLHTFIVLRPTL--GTVSCLGA*RVNISLGAQEEFNQVSKIFY-RGTFFFRLVLFVHRP 334
KD+ F + TL G++ + + +I+ N ++ IF RG F+ LV F H
Sbjct: 22 KDILLFEIYATTLLLGSIYSIYVDKWSITSYFGNSKNLINLIFVKRGWFWTSLVYFYHAW 81
Query: 335 DAQRN 349
D +RN
Sbjct: 82 DQKRN 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,044
Number of Sequences: 5004
Number of extensions: 42137
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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