Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c06f
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0438 - 17737040-17737122,17737373-17737496,17737897-177381...    35   0.057

>11_04_0438 -
           17737040-17737122,17737373-17737496,17737897-17738182,
           17738265-17738397,17738742-17738953,17739455-17739816,
           17739907-17739937,17744738-17745111
          Length = 534

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +2

Query: 188 LRPTLGTVSCLGA*RVNISLGAQEEFNQVSKIFYRGTFFFRLVLFVHRPDAQRNVPEGKK 367
           LR +LG  SC+    VN S    +E N   K  Y   FF R+ +  HR D  +     K+
Sbjct: 410 LRASLGLKSCIDKLEVNKSREPNKEIND--KSLYNSLFFLRVYMVAHRDDLIKGYSGAKE 467

Query: 368 S 370
           +
Sbjct: 468 T 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,346,009
Number of Sequences: 37544
Number of extensions: 212425
Number of successful extensions: 363
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)