Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c06f
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.0  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   6.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.2  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 245 LGAQEEFNQVSKIFYRGTF 301
           LG++EE NQ+++ FY  ++
Sbjct: 9   LGSEEEGNQLNRSFYSASY 27


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 446 TCLVLILNEKQRNRYVIYRYIVMFI--WIFFLL 354
           T LVLI + +  +RYV+  +I M    W+  LL
Sbjct: 275 TVLVLIFHHRTPDRYVMPSWIKMLFLQWLPCLL 307


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 446 TCLVLILNEKQRNRYVIYRYIVMFI--WIFFLL 354
           T LVLI + +  +RYV+  +I M    W+  LL
Sbjct: 275 TVLVLIFHHRTPDRYVMPSWIKMLFLQWLPCLL 307


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 446 TCLVLILNEKQRNRYVIYRYIVMFI--WIFFLL 354
           T LVLI + +  +RYV+  +I M    W+  LL
Sbjct: 275 TVLVLIFHHRTPDRYVMPSWIKMLFLQWLPCLL 307


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 446 TCLVLILNEKQRNRYVIYRYIVMFI--WIFFLL 354
           T LVLI + +  +RYV+  +I M    W+  LL
Sbjct: 275 TVLVLIFHHRTPDRYVMPSWIKMLFLQWLPCLL 307


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 446 TCLVLILNEKQRNRYVIYRYIVMFI--WIFFLL 354
           T LVLI + +  +RYV+  +I M    W+  LL
Sbjct: 275 TVLVLIFHHRTPDRYVMPSWIKMLFLQWLPCLL 307


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 446 TCLVLILNEKQRNRYVIYRYIVMFI--WIFFLL 354
           T LVLI + +  +RYV+  +I M    W+  LL
Sbjct: 275 TVLVLIFHHRTPDRYVMPSWIKMLFLQWLPCLL 307


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 174 IHSLYSGLLSGQLVV 218
           I+ LY GLLSG +++
Sbjct: 126 IYHLYMGLLSGGIIL 140


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 468 SPAWWLDFNYFLFAFNIAFSLI 533
           S  W+L    FLFA  + F+ +
Sbjct: 294 SEIWFLGCTIFLFAAMVEFAFV 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,069
Number of Sequences: 438
Number of extensions: 2960
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)