Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c06f
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61460.1 68418.m07712 structural maintenance of chromosomes (...    31   0.44 
At1g75200.1 68414.m08736 flavodoxin family protein / radical SAM...    27   7.2  
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p...    27   7.2  

>At5g61460.1 68418.m07712 structural maintenance of chromosomes
           (SMC) family protein very strong similarity to SMC-like
           protein (MIM) [Arabidopsis thaliana] GI:5880614;
           contains Pfam profile PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1057

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 222 PKQLTVPRVGLSTMNVCKSFKTRVRCDSVFVKKESNLNEQCLRR 91
           P Q T+P +      +C SF  +++   +   KE N   QC+RR
Sbjct: 617 PVQTTLPPLSRRPSRLCASFDDQIKDLEIEASKEQNEINQCMRR 660


>At1g75200.1 68414.m08736 flavodoxin family protein / radical SAM
           domain-containing protein contains Pfam profiles
           PF00258: Flavodoxin, PF04055: radical SAM domain protein
          Length = 647

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 20  SRRARVALSILRNS*TFYILYLLRRLKH 103
           S R R+A   L ++ TFY ++  RRLKH
Sbjct: 6   SVRVRLAFVALLSATTFYCIHKYRRLKH 33


>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 909

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 380 MFIWIFFLLERFFAHLV 330
           MFIW+FF + +FF HLV
Sbjct: 888 MFIWLFF-IHQFFNHLV 903


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,805,457
Number of Sequences: 28952
Number of extensions: 195443
Number of successful extensions: 409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)