Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c03r
         (753 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    36   3e-04
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   3.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   6.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.0  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -1

Query: 738 INDVFKGTGSGFCVSGRIENGVLKKGDKVLVCPTKEMAEVRSLSIN 601
           + DV+K  G G    GR+E GVLK G  V+  P     EV+S+ ++
Sbjct: 1   LQDVYKIGGIGTVPVGRVETGVLKPGMVVVFAPANITTEVKSVEMH 46


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 630 FLLLDKPILYRPSLELRFQCVPKHK 704
           FLL  KP +++  ++L  + + KH+
Sbjct: 230 FLLGQKPFIFQEVIDLGGEAISKHE 254


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 173 VTRPAAMVTPATRNITRPSSLTS 241
           +T PAA   PAT +   P+S+ S
Sbjct: 27  MTSPAAAPPPATTSSGSPASVAS 49


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 249 SRCIWACWSQFQQLPQ 296
           S  ++ CWS+F Q  Q
Sbjct: 227 SGSLYTCWSEFTQKTQ 242


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,889
Number of Sequences: 336
Number of extensions: 3579
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)