Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c03r
(753 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 92 4e-19
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 70 2e-12
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 49 4e-06
SB_59711| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8) 32 0.57
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07) 31 0.76
SB_22869| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 30 2.3
SB_15892| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 92.3 bits (219), Expect = 4e-19
Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 1/200 (0%)
Frame = -1
Query: 753 PLRISINDVFKGTGSGFCVSGRIENGVLKKGDKVLVCPTKEMAEVRSLSINDLTNNVAFA 574
PLR+ + DV+K G G GR+E GVLK G V P+ EV+S+ ++ + A
Sbjct: 104 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALP 163
Query: 573 GDQVTLTLSGVDMQNVSVGYILSD-PIEQVSVTTRFEARIVVFNVKVPITKGFPVLVHYQ 397
GD V + V ++++ G + D F A+++V N I G+ ++
Sbjct: 164 GDNVGFNVKNVSVKDIKRGNVAGDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCH 223
Query: 396 SLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKDVKELGRV 217
+ + KL + + +G+ ++ P+ + A+VE+ S+P+C+E + + LGR
Sbjct: 224 TAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRF 283
Query: 216 MLRVAGVTIAAGLVTDIIST 157
+R T+A G++ + T
Sbjct: 284 AVRDMKQTVAVGVIKSVDKT 303
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/48 (64%), Positives = 38/48 (79%)
Frame = -1
Query: 315 RCLGNNSVAVVEIETSRPICIERYKDVKELGRVMLRVAGVTIAAGLVT 172
RCL NS A VE++TSRP+C+E YKD K+LGR MLR G TIAAG++T
Sbjct: 32 RCLPKNSNAEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVIT 79
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 49.2 bits (112), Expect = 4e-06
Identities = 24/64 (37%), Positives = 40/64 (62%)
Frame = -1
Query: 399 QSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKDVKELGR 220
Q+LV N +L AL+ K TG+ + +PR + + +A+ +ET ICIE++ D +++GR
Sbjct: 482 QTLVLMPN-KRLIALIDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGR 540
Query: 219 VMLR 208
LR
Sbjct: 541 FTLR 544
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 720 GTGSGFCVSGRIENGVLKKGDKVLVCPTKEM 628
G G V G++E+G + KG +++ P K +
Sbjct: 462 GDDMGTIVLGKVESGTINKGQTLVLMPNKRL 492
>SB_59711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -1
Query: 522 VGYILSDPIEQVSVTTRFEARIVVFNVKVPITKGF 418
VG +L DP + T R +ARI+VFN++VPIT GF
Sbjct: 50 VGTVLCDPASPIRGTCRIKARIIVFNIEVPITNGF 84
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 42.3 bits (95), Expect = 4e-04
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Frame = -1
Query: 696 SGRIENGVLKKGDKVLVCP--TKEMAEVRSLSI--NDLTNNVAFAGDQVTLTLSGVDMQN 529
S + G+L +GD ++V P + VR LS+ N V AG + LSG++
Sbjct: 332 SADVRRGILHEGDTLVVGPLCSGHFQTVRILSLKRNRAPCRVVRAGQSASAALSGIERHE 391
Query: 528 VSVGYILSDPIEQVSVTTRFEARIVVFNVKVPITKGFPVLVHYQSLVESANI 373
+ G +++DP + F A + + I+K F V+ +++++A I
Sbjct: 392 LRRGMVMTDPSLEPRACMCFWADVYLLFHPAAISKRFQATVYIDNVIQNAII 443
>SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8)
Length = 677
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 563 TWSPANATLLVRSFILKLLTSAISFVGQTNTLSPFFRTPFSM 688
T SPA + L L+L++ A+ V TNT SPF +P M
Sbjct: 245 TPSPAGRSQLQSPVPLRLMSPALGQVPATNTRSPFLESPLMM 286
>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
Length = 1306
Score = 31.5 bits (68), Expect = 0.76
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 5/154 (3%)
Frame = -1
Query: 669 KKGDKVLVCPTKEMAEVRSLSIN-DLTNNVAFAGDQVTLTLSGVDMQNVSVGYILSDPIE 493
+ G V V ++E A +N D+T NVA D ++TLSG D Q++ +E
Sbjct: 38 ESGVMVAVGMSQEQANSLLCELNLDMTVNVAAVNDAQSVTLSG-DRQSMEA---FKKHLE 93
Query: 492 QVSVTTRFE----ARIVVFNVKVPITKGFPVLVHYQSLVESANIVKLKALLSKSTGELIK 325
+ ++ AR + PI K F + L S + + +S GE +
Sbjct: 94 LNDIKCDWKELNTARAFHSSHMAPIEKEFKQKIAKMHLTPSETNITFYSTRQRSAGETAE 153
Query: 324 KKPRCLGNNSVAVVEIETSRPICIERYKDVKELG 223
++ + N V+ + ++ I + Y+D+ E+G
Sbjct: 154 RR-ILVSNIRQPVLFNDATKAILQDGYRDIIEVG 186
>SB_22869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Frame = -1
Query: 405 HYQSLVESANIVKLKALLSKS--TGELIKKKPRC-LGNNSVAVVEIETSRPICIERYKD- 238
+Y L ES N L+++ S + +L+ + +C L N+ + ++SRP +KD
Sbjct: 213 NYDELGESFNREDLRSISSGTPLVQDLLTVEVKCNLSNSLPNLTTPKSSRPASCPAFKDR 272
Query: 237 -VKELGRVMLRVAGVTIA 187
VKEL ++ + +G+++A
Sbjct: 273 DVKELDELLCQNSGISVA 290
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/93 (22%), Positives = 38/93 (40%)
Frame = +2
Query: 452 TTIRASKRVVTETCSIGSLSMYPTDTFCMSTPDKVNVTWSPANATLLVRSFILKLLTSAI 631
TT + + ET + ++ P T T D T +P + + +
Sbjct: 3038 TTDAPATTLAPETTAAPKTTVAPETTVAPETTDAPATTMAPETKAVSETTMAPEATVVPK 3097
Query: 632 SFVGQTNTLSPFFRTPFSMRPETQNPEPVPLNT 730
+ VG + T+SP T + PET +P + ++T
Sbjct: 3098 TTVGPSTTISPKTETSITETPET-SPATISIST 3129
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = +2
Query: 437 TLTLKTTIRASKRVVTETCSIGSLSMYPTDTFCMSTPDKVNVTWSPANATLLVRSFILKL 616
T++ +TT+ V TET + ++ P T T +T +P +F L+
Sbjct: 1743 TVSQETTVAPETTVPTETTAAPETTLEPEITVAPETTVAPEITAAPDTTLAPETTFKLES 1802
Query: 617 LTSAISFVGQTNTLSP 664
+ S V T+SP
Sbjct: 1803 TVAPESTVSPETTVSP 1818
>SB_15892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 36
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 714 GSGFCVSGRIENGVLKKGDKVLVCPTKE 631
G+G ++G++E G ++ GDK L P E
Sbjct: 3 GTGINLAGKMEAGHIQTGDKALAMPAGE 30
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,058,783
Number of Sequences: 59808
Number of extensions: 396729
Number of successful extensions: 1033
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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