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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c03r
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...   130   8e-31
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...   130   8e-31
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...   104   6e-23
U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    99   3e-21
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    99   3e-21
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    99   3e-21
L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding pro...    50   1e-06
AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditi...    50   2e-06
D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation fact...    46   3e-05
D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation fact...    46   3e-05
AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongatio...    46   3e-05
U80437-9|AAN84843.1|  439|Caenorhabditis elegans Tu elongation f...    38   0.010
AB010028-1|BAA31345.1|  439|Caenorhabditis elegans mitochondrial...    38   0.010
Z83244-7|CAB05829.1|  318|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81098-1|CAB03183.1|  581|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AC024751-8|AAK21510.3|  369|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score =  130 bits (315), Expect = 8e-31
 Identities = 75/201 (37%), Positives = 115/201 (57%), Gaps = 3/201 (1%)
 Frame = -1

Query: 753 PLRISINDVFKGTGSGFCVSGRIENGVLKKGDKVLVCPTKEMAEVRSLSINDLTNNVAFA 574
           PLRI I+DV K   +   VSG+IE+G ++K DKV +  +   A V+  + ND + +  FA
Sbjct: 392 PLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAATVKECANNDGSRH-CFA 450

Query: 573 GDQVTLTLSGV-DMQNVSVGYIL--SDPIEQVSVTTRFEARIVVFNVKVPITKGFPVLVH 403
           GD + LTL G  + +++  G ++  + P + +  + +FE R+V F + +PI KG    ++
Sbjct: 451 GDYILLTLQGTFEPESIQTGSVVVRAGP-DTLIPSKKFEVRLVAFEIAMPIIKGAKAELY 509

Query: 402 YQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKDVKELG 223
             SL        L   ++KS GE++KK PR +   + AVVEIET   I IE +   + LG
Sbjct: 510 AHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALG 569

Query: 222 RVMLRVAGVTIAAGLVTDIIS 160
           RV  R  G TIAAG+V  +I+
Sbjct: 570 RVTFRAGGNTIAAGIVEKVIT 590


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical protein
            K07A12.4a protein.
          Length = 610

 Score =  130 bits (315), Expect = 8e-31
 Identities = 75/201 (37%), Positives = 115/201 (57%), Gaps = 3/201 (1%)
 Frame = -1

Query: 753  PLRISINDVFKGTGSGFCVSGRIENGVLKKGDKVLVCPTKEMAEVRSLSINDLTNNVAFA 574
            PLRI I+DV K   +   VSG+IE+G ++K DKV +  +   A V+  + ND + +  FA
Sbjct: 410  PLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAATVKECANNDGSRH-CFA 468

Query: 573  GDQVTLTLSGV-DMQNVSVGYIL--SDPIEQVSVTTRFEARIVVFNVKVPITKGFPVLVH 403
            GD + LTL G  + +++  G ++  + P + +  + +FE R+V F + +PI KG    ++
Sbjct: 469  GDYILLTLQGTFEPESIQTGSVVVRAGP-DTLIPSKKFEVRLVAFEIAMPIIKGAKAELY 527

Query: 402  YQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKDVKELG 223
              SL        L   ++KS GE++KK PR +   + AVVEIET   I IE +   + LG
Sbjct: 528  AHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALG 587

Query: 222  RVMLRVAGVTIAAGLVTDIIS 160
            RV  R  G TIAAG+V  +I+
Sbjct: 588  RVTFRAGGNTIAAGIVEKVIT 608


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score =  104 bits (250), Expect = 6e-23
 Identities = 54/197 (27%), Positives = 102/197 (51%)
 Frame = -1

Query: 753 PLRISINDVFKGTGSGFCVSGRIENGVLKKGDKVLVCPTKEMAEVRSLSINDLTNNVAFA 574
           P+R ++ + +   G+   + G++E+G ++KGD ++V P K+  +V  +  +D+      A
Sbjct: 339 PVRCTVAEKYSEMGT--VIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVA 396

Query: 573 GDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTRFEARIVVFNVKVPITKGFPVLVHYQS 394
           GD +   L G++   +  G+I+  P         F+A ++V   +  I  G+  ++H QS
Sbjct: 397 GDNIKFKLKGIEENELQGGFIICSPDSLAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQS 456

Query: 393 LVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKDVKELGRVM 214
            VE   +  + A + K TGE  KK+ + +  +   ++ +E+  P  +E +K+   LGR  
Sbjct: 457 AVEEVTVKGVIATIDKKTGE--KKRAKFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFT 514

Query: 213 LRVAGVTIAAGLVTDII 163
           LR  G TIA G V  ++
Sbjct: 515 LRDEGKTIAIGKVLKVV 531


>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 52/197 (26%), Positives = 101/197 (51%), Gaps = 1/197 (0%)
 Frame = -1

Query: 753 PLRISINDVFKGTGSGFCVSGRIENGVLKKGDKVLVCPTKEMAEVRSLSINDLTNNVAFA 574
           PLR+ + DV+K  G G    GR+E G++K G  V   P     EV+S+ ++  +   A  
Sbjct: 211 PLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVP 270

Query: 573 GDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTR-FEARIVVFNVKVPITKGFPVLVHYQ 397
           GD V   +  V ++++  G + SD  +  +   R F A++++ N    I+ G+  ++   
Sbjct: 271 GDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCH 330

Query: 396 SLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKDVKELGRV 217
           +   +    +LK  + + TG+ ++  P+ L +    +VE+  ++P+C+E + D   LGR 
Sbjct: 331 TAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRF 390

Query: 216 MLRVAGVTIAAGLVTDI 166
            +R    T+A G++  +
Sbjct: 391 AVRDMRQTVAVGVIKSV 407


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 52/197 (26%), Positives = 101/197 (51%), Gaps = 1/197 (0%)
 Frame = -1

Query: 753 PLRISINDVFKGTGSGFCVSGRIENGVLKKGDKVLVCPTKEMAEVRSLSINDLTNNVAFA 574
           PLR+ + DV+K  G G    GR+E G++K G  V   P     EV+S+ ++  +   A  
Sbjct: 245 PLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVP 304

Query: 573 GDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTR-FEARIVVFNVKVPITKGFPVLVHYQ 397
           GD V   +  V ++++  G + SD  +  +   R F A++++ N    I+ G+  ++   
Sbjct: 305 GDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCH 364

Query: 396 SLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKDVKELGRV 217
           +   +    +LK  + + TG+ ++  P+ L +    +VE+  ++P+C+E + D   LGR 
Sbjct: 365 TAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRF 424

Query: 216 MLRVAGVTIAAGLVTDI 166
            +R    T+A G++  +
Sbjct: 425 AVRDMRQTVAVGVIKSV 441


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 52/197 (26%), Positives = 101/197 (51%), Gaps = 1/197 (0%)
 Frame = -1

Query: 753 PLRISINDVFKGTGSGFCVSGRIENGVLKKGDKVLVCPTKEMAEVRSLSINDLTNNVAFA 574
           PLR+ + DV+K  G G    GR+E G++K G  V   P     EV+S+ ++  +   A  
Sbjct: 245 PLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVP 304

Query: 573 GDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTR-FEARIVVFNVKVPITKGFPVLVHYQ 397
           GD V   +  V ++++  G + SD  +  +   R F A++++ N    I+ G+  ++   
Sbjct: 305 GDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCH 364

Query: 396 SLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKDVKELGRV 217
           +   +    +LK  + + TG+ ++  P+ L +    +VE+  ++P+C+E + D   LGR 
Sbjct: 365 TAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRF 424

Query: 216 MLRVAGVTIAAGLVTDI 166
            +R    T+A G++  +
Sbjct: 425 AVRDMRQTVAVGVIKSV 441


>L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding
           protein protein.
          Length = 593

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
 Frame = -1

Query: 753 PLRISINDVFKGTGSGFCVSGRIENGVLKKGDKVLVCPTKE----MAEVRSLSINDLTNN 586
           P    I+D++   G G   SG + +G ++  D +L+ PT         ++S+        
Sbjct: 373 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVG 432

Query: 585 VAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTRFEARIVVFNVKVPITKGFPVLV 406
           +   G   +  L  +  ++V  G +L DP  +   +  FEA I+V +    I   +  ++
Sbjct: 433 IVKCGQSASFALKKIPKKDVRQGMVLVDPKVKPVASMVFEAEILVLHHPTTIKPNYQAML 492

Query: 405 HYQSLVESANIVKLKALLSKSTGE 334
           H  S+ ++A +V +    S STG+
Sbjct: 493 HIGSVRQTATLVSMGR--SASTGD 514


>AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditis
           gtp-binding proteinprotein 1 protein.
          Length = 613

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
 Frame = -1

Query: 753 PLRISINDVFKGTGSGFCVSGRIENGVLKKGDKVLVCPTKE----MAEVRSLSINDLTNN 586
           P    I+D++   G G   SG + +G ++  D +L+ PT         ++S+    +   
Sbjct: 372 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVG 431

Query: 585 VAFAGDQVTLTLSGVDMQNVSVGYILSDPIEQVSVTTRFEARIVVFNVKVPITKGFPVLV 406
           +   G   +  L  +  ++V  G +L DP  +   +  FEA I+V +    I   +  ++
Sbjct: 432 IVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMVFEAEILVLHHPTTIKPNYQAML 491

Query: 405 HYQSLVESANIVKL 364
           H  S+ ++A +V +
Sbjct: 492 HIGSVRQTATLVSM 505


>D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 495

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
 Frame = -1

Query: 729 VFKGTGSGFCVSGRIENGVLKKGDKV-LVCPTKEMAEVRSLSINDL-----TNNVAFAGD 568
           V+   G G  ++G++E G+LK+GDK+ +V  TK+   V+S+ I+ L     T + A  GD
Sbjct: 259 VYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSV-ISGLESFRKTVDQAEPGD 317

Query: 567 QVTLTLSGVDMQNVSVGYILSDPIEQVSVTTRFEARIVV 451
           Q+ + L G+  ++V  G +L     +  VT + +A++ V
Sbjct: 318 QLGVLLRGLGPKDVRRGCVLLPQGHKHKVTDKVKAQLYV 356


>D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 496

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
 Frame = -1

Query: 729 VFKGTGSGFCVSGRIENGVLKKGDKV-LVCPTKEMAEVRSLSINDL-----TNNVAFAGD 568
           V+   G G  ++G++E G+LK+GDK+ +V  TK+   V+S+ I+ L     T + A  GD
Sbjct: 260 VYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSV-ISGLESFRKTVDQAEPGD 318

Query: 567 QVTLTLSGVDMQNVSVGYILSDPIEQVSVTTRFEARIVV 451
           Q+ + L G+  ++V  G +L     +  VT + +A++ V
Sbjct: 319 QLGVLLRGLGPKDVRRGCVLLPQGHKHKVTDKVKAQLYV 357


>AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongation
           factor (ef-tu), mitochondrialprotein 1 protein.
          Length = 496

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
 Frame = -1

Query: 729 VFKGTGSGFCVSGRIENGVLKKGDKV-LVCPTKEMAEVRSLSINDL-----TNNVAFAGD 568
           V+   G G  ++G++E G+LK+GDK+ +V  TK+   V+S+ I+ L     T + A  GD
Sbjct: 260 VYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSV-ISGLESFRKTVDQAEPGD 318

Query: 567 QVTLTLSGVDMQNVSVGYILSDPIEQVSVTTRFEARIVV 451
           Q+ + L G+  ++V  G +L     +  VT + +A++ V
Sbjct: 319 QLGVLLRGLGPKDVRRGCVLLPQGHKHKVTDKVKAQLYV 357


>U80437-9|AAN84843.1|  439|Caenorhabditis elegans Tu elongation
           factor (ef-tu), mitochondrialprotein 2 protein.
          Length = 439

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = -1

Query: 717 TGSGFCVSGRIENGVLKKGDKVLVCPTKEMAEVRSLSINDLTNNV--AFAGDQVTLTLSG 544
           TG G  + G +E GVLKKGDKV +    +  +  +  I     +V    AGD   +   G
Sbjct: 251 TGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRG 310

Query: 543 VDMQNVSVGYILSDPIEQVSVTTRFEARIVVFN 445
           V    V  G     P   V++T R +  + + +
Sbjct: 311 VKGDTVKRGMWAGHP-GAVTITNRVKVELYLLS 342


>AB010028-1|BAA31345.1|  439|Caenorhabditis elegans mitochondrial
           elongation factorTu homologue protein.
          Length = 439

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = -1

Query: 717 TGSGFCVSGRIENGVLKKGDKVLVCPTKEMAEVRSLSINDLTNNV--AFAGDQVTLTLSG 544
           TG G  + G +E GVLKKGDKV +    +  +  +  I     +V    AGD   +   G
Sbjct: 251 TGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRG 310

Query: 543 VDMQNVSVGYILSDPIEQVSVTTRFEARIVVFN 445
           V    V  G     P   V++T R +  + + +
Sbjct: 311 VKGDTVKRGMWAGHP-GAVTITNRVKVELYLLS 342


>Z83244-7|CAB05829.1|  318|Caenorhabditis elegans Hypothetical
           protein W06F12.3 protein.
          Length = 318

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = -1

Query: 408 VHYQSLVESANIVKLKALLSKSTGELIKKKPRCLGNNSVAVVEIETSRPICIERYKDVKE 229
           VHY   +   N + ++ L S  T     +K RC    + A V I+     C+E  K + E
Sbjct: 97  VHYSGEIGGYNFIVMQLLGSNITDLRKFQKGRCFSAETTARVGIQ-----CLEGLKQIHE 151

Query: 228 LGRVMLRVAGVTIAAGL 178
           LG +   +    I  G+
Sbjct: 152 LGYIHRDIKPSNICVGI 168


>Z81098-1|CAB03183.1|  581|Caenorhabditis elegans Hypothetical
           protein K07A12.1 protein.
          Length = 581

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -1

Query: 348 KSTGELIKKKPRCLGNNSVAVVEIETSRPICIE----RYKDVKELGRVMLRVAGVTIAAG 181
           ++TG ++K KPR   +    +  +ET +  CI     R+ +  E    M  +A   +  G
Sbjct: 99  RATGRIVKNKPRWFPDRDYGLSMVETKKEGCISWFTLRHNNAYEQRERMFWMAEKRMNVG 158

Query: 180 LVTDIIS 160
           +V +I S
Sbjct: 159 VVQEIFS 165


>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical protein
            D2085.1 protein.
          Length = 2198

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 699  VSGRIENGVLKKGDKVLVCPTKEMAEVRSLSINDLTNNVAFA 574
            VS  IEN  +  GD  LV P ++M ++    I D+T  +A A
Sbjct: 1153 VSEHIENAGVHSGDATLVTPAQDMNKLTLDRIKDITFRIAEA 1194


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +2

Query: 419 KPFVIGTLTLKTTIRASKRVVTETCSIGSLSMYPTDTFCMSTPDKVNV-TWSPANATLLV 595
           +P V   +T  TT R + R  T+  +    +   T T    TP    + T S A  T   
Sbjct: 320 RPNVTKPITRSTTKRTTTRSTTKRLTTTKATTVLTTTPVKVTPATTTLPTTSLALETTTT 379

Query: 596 RSFILKLLTSAISFVGQTNTLSPFFRTPFS 685
            +     +T A++ V +TNT  P   TP S
Sbjct: 380 ATRTTAKIT-AVATVARTNTTQPPTTTPLS 408


>AC024751-8|AAK21510.3|  369|Caenorhabditis elegans Hypothetical
           protein Y18H1A.7 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 7/148 (4%)
 Frame = -1

Query: 651 LVCPTKEMAEVRSLSINDLTNNVAFAGDQVTLT--LSGVDMQNVSVGYILSDPIEQVSVT 478
           LV  +K  +E    + N   N  A A +Q  L    +G      S G+    P E    T
Sbjct: 166 LVKISKICSEKLPKTANSTENQDAPATEQTMLNNRAAGSSPSRKSPGFA-EKPSEFAKST 224

Query: 477 TRFEARIVVFNV---KVPITKGFP--VLVHYQSLVESANIVKLKALLSKSTGELIKKKPR 313
            +    + +  +   K+P T      + + ++ LVE + I  LKA + +   + ++K PR
Sbjct: 225 PKIRKLVEISKICSEKLPETANSTEKIALDFKKLVEISKIA-LKAEIPEPERKRLRKSPR 283

Query: 312 CLGNNSVAVVEIETSRPICIERYKDVKE 229
             G+  + ++  E          K+ KE
Sbjct: 284 LAGSTKIPLIRPEKQSETAKSTPKNFKE 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,802,276
Number of Sequences: 27780
Number of extensions: 309901
Number of successful extensions: 852
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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