Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c03f
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   3.0  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    26   4.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   5.3  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    26   5.3  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   5.3  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   9.2  

>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -1

Query: 459 SDTVSPKIFRSSSKQDMSLVSPSASSLR 376
           S  V+P + +S+S  + SL++PS+S LR
Sbjct: 572 SSLVNPTLAKSASLNNSSLLNPSSSLLR 599


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 170 RHHSHQSNFCSECYDVEPLFINNIKSVPMLQKP 72
           RHH+     CS  Y + P++  +++S+  L  P
Sbjct: 301 RHHATPVVVCSGIYKLSPVYPYDLESIIQLSSP 333


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 524  VYRLKLCCNQNYV*AHSESLYFPILYHLKYS 432
            +Y+L+    QNY      +  FP+LY L ++
Sbjct: 963  LYKLRFAIEQNYFEPQMFACIFPLLYDLTFN 993


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -3

Query: 130 TMSSHCSLIISKVFLCYRNHICNKWMFFGKTRKINNTFRFG 8
           T+   C  I  K F+     +C ++ ++G T    N  +FG
Sbjct: 73  TLPRVCGTIPWKAFIIIIVELCERFAYYGLTVPFQNYMQFG 113


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 230 ATHHLEINNYPLPLNVHKNHRHHSHQSN 147
           +THH   ++Y    + H  H HHSH S+
Sbjct: 14  STHH-HTHDYDHHNHDHHGHDHHSHDSS 40


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +1

Query: 13   NETCYLFCEFFR--KTSIYCKYGFC---NIGTLLILLMNNGSTS 129
            NETCY+ C   R  K   Y  +       +G LL+L  ++G+ S
Sbjct: 915  NETCYMICSIERLLKVIFYRIHEILLDPKLGQLLLLFESDGANS 958


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,663
Number of Sequences: 5004
Number of extensions: 41824
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)