Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c03f
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39720.1 68417.m05622 VQ motif-containing protein contains PF...    29   2.6  
At2g29060.1 68415.m03532 scarecrow transcription factor family p...    29   3.4  
At1g73980.1 68414.m08568 phosphoribulokinase/uridine kinase fami...    29   3.4  
At1g13450.1 68414.m01572 DNA binding protein GT-1 identical to D...    23   4.1  
At3g04580.2 68416.m00487 ethylene receptor, putative (EIN4) simi...    28   4.5  
At3g04580.1 68416.m00486 ethylene receptor, putative (EIN4) simi...    28   4.5  
At4g37270.1 68417.m05275 cadmium/zinc-transporting ATPase, putat...    28   6.0  
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ...    28   6.0  
At3g44200.1 68416.m04739 protein kinase family protein contains ...    27   7.9  
At1g64100.1 68414.m07261 pentatricopeptide (PPR) repeat-containi...    27   7.9  

>At4g39720.1 68417.m05622 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 290

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 224 HHLEINNYPLPLNVHKNHRHHSHQSNFCSECYDVEPLFINNIKSVPMLQKP 72
           H+  +++ P P   H+N  H  H +N       + P + NN   +P+ Q+P
Sbjct: 39  HNNHVSSIPTPQQNHRNLLHFDHNNNNSL----IPPNYFNNNTFLPVNQQP 85


>At2g29060.1 68415.m03532 scarecrow transcription factor family
           protein 
          Length = 1336

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +2

Query: 347 QRRESTDLCSLKLDAEGETRLMSCLDELRNILGDTVSENTMIQSVLK 487
           Q+ ES  L  LKL  EGE   ++ L   RN+L +TV+ ++   +VLK
Sbjct: 501 QKWESIKLEDLKLK-EGEFVAVNSLFRFRNLLDETVAVHSPRDTVLK 546


>At1g73980.1 68414.m08568 phosphoribulokinase/uridine kinase family
           protein weak similarity to SP|Q59190 Uridine kinase (EC
           2.7.1.48) (Uridine monophosphokinase) (Cytidine
           monophosphokinase) {Borrelia burgdorferi}; contains Pfam
           profile PF00485: Phosphoribulokinase / Uridine kinase
           family
          Length = 643

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 353 RESTDLCSLKLDAEGETRLMSCLDELRNILGDTVSENTMIQ 475
           RES  +  + L A G+ ++M  +D L N+L + V E T I+
Sbjct: 564 RESPLMEEVVLVARGQRQIMHQMDTLSNLLREYVGEKTRIE 604


>At1g13450.1 68414.m01572 DNA binding protein GT-1 identical to DNA
           binding protein GT-1 GI:598073 from [Arabidopsis
           thaliana]
          Length = 406

 Score = 23.4 bits (48), Expect(2) = 4.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 218 LEINNYPLPLNVHKNHRHHSH 156
           L   N  + L  H +H HH+H
Sbjct: 34  LTTTNESVDLQSHHHHNHHNH 54



 Score = 23.4 bits (48), Expect(2) = 4.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 182 HKNHRHHSHQS 150
           H +H HH HQS
Sbjct: 49  HNHHNHHLHQS 59


>At3g04580.2 68416.m00487 ethylene receptor, putative (EIN4) similar
           to ethylene receptor GB:AAC31123 [Malus domestica],
           identical to putative ethylene receptor GB:AAD02485
           [Arabidopsis thaliana]; Pfam HMM hit: response regulator
           receiver domain, signal C terminal domain
          Length = 766

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = +3

Query: 57  HLLQIWFL*HRNTFDIINEQWLDIVTFGTEV----TLMTMMTMIFMDIQWKRIVVYLQ 218
           HLL  W     ++F ++   WL I  F T +    T +T++T+I + ++WK   +YL+
Sbjct: 91  HLLNAWTYYGPHSFQLM--LWLTIFKFLTALVSCATAITLLTLIPLLLKWKVRELYLK 146


>At3g04580.1 68416.m00486 ethylene receptor, putative (EIN4) similar
           to ethylene receptor GB:AAC31123 [Malus domestica],
           identical to putative ethylene receptor GB:AAD02485
           [Arabidopsis thaliana]; Pfam HMM hit: response regulator
           receiver domain, signal C terminal domain
          Length = 766

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = +3

Query: 57  HLLQIWFL*HRNTFDIINEQWLDIVTFGTEV----TLMTMMTMIFMDIQWKRIVVYLQ 218
           HLL  W     ++F ++   WL I  F T +    T +T++T+I + ++WK   +YL+
Sbjct: 91  HLLNAWTYYGPHSFQLM--LWLTIFKFLTALVSCATAITLLTLIPLLLKWKVRELYLK 146


>At4g37270.1 68417.m05275 cadmium/zinc-transporting ATPase, putative
           (HMA1) contains InterPro accession IPR001757: ATPase,
           E1-E2 type; identical to Potential
           cadmium/zinc-transporting ATPase HMA1 (EC 3.6.3.3) (EC
           3.6.3.5) (Swiss-Prot:Q9M3H5) [Arabidopsis thaliana];
           identical to cDNA putative transcription factor (MYB73)
           mRNA, partial cds GI:3941503
          Length = 819

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 182 HKNHRHHSHQSNFCS 138
           H NH HH HQ   CS
Sbjct: 79  HHNHHHHHHQHGCCS 93


>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
           similar to finger protein pcp1 GB:S48856 from [Solanum
           tuberosum]  contains Pfam domain, PF00096: Zinc finger,
           C2H2 type
          Length = 513

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 239 RSIATHHLEINNYPLPLNVHK--NHRHHSHQS 150
           R +     + NN P PL +H+  +H HH HQ+
Sbjct: 233 REVVIPQNQNNNQPNPLLIHQSASHPHHHHQT 264


>At3g44200.1 68416.m04739 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 941

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 200 PLPLNVHKNHRHHSHQSNFCSECYDVEPLFINNIKSVP 87
           PLPL+V  +H+ +SH  N  S       L  NN  S P
Sbjct: 703 PLPLHVEPSHQVNSHSDNKTSVMSQNSALEKNNSHSHP 740


>At1g64100.1 68414.m07261 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 666

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 431 RNILGDTVSENTMIQSVLKHN-FDYNKALDDIL 526
           R I  DTV+ N+MI    KHN FD  K + D++
Sbjct: 395 RCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM 427


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,645,431
Number of Sequences: 28952
Number of extensions: 209790
Number of successful extensions: 685
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)