Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c02r
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 31 0.22
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 29 0.52
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.2
SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc... 27 2.8
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 4.8
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 6.4
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 30.7 bits (66), Expect = 0.22
Identities = 21/89 (23%), Positives = 36/89 (40%)
Frame = -1
Query: 284 THILVQYELNVHKNLVSGELHTSMRLLSLMPSATVRMDYMPTDSITEALSRRFVPSMNRN 105
T+I +Q+ N H+ G+L TS L + ++R Y+ + + PS+
Sbjct: 557 TNIFIQFYSNSHR----GDLSTSESKGELKTAKSLRQTYLSLLPYAQVANFSLPPSLYEI 612
Query: 104 SAENWGTHFASILLEKAKNKIPFPNVCFN 18
S A++ E P P CF+
Sbjct: 613 SPSQEENQRAALFSEDVSYTAPSPQTCFH 641
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 29.5 bits (63), Expect = 0.52
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +1
Query: 271 TSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNAVGTLAP-----FTISLVTLCSI 435
+S+ + +P+ +SSSL STS P T T+ +L P ++ SL+T+CS
Sbjct: 557 SSLIISSPI--ISSSLTATSTSTPALTH-SITPSNTSYTSSLIPSSSTDYSSSLITVCSN 613
Query: 436 FVTSIFS 456
+ I S
Sbjct: 614 VTSEISS 620
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 271 TSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVT 444
T++ P+ SSS++ +ST + + L + P T++ V T P T S V S +T
Sbjct: 448 TALNTSTPI--TSSSVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPIT 505
Query: 445 SIFSMDTRNPL 477
S +++T P+
Sbjct: 506 SSTALNTSTPI 516
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 307 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 477
SSS++ +ST + + L + P T++ V T P T S V S +TS +++T P+
Sbjct: 1538 SSSVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVVNSSTPITSSTALNTSTPI 1596
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 307 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 477
SSS++ ST + + L + P T++ V T P T S V S +TS +++T P+
Sbjct: 1994 SSSVLNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI 2052
Score = 27.1 bits (57), Expect = 2.8
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 271 TSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVT 444
T++ P+ SSS++ +ST + T + + P T++ V + P T S V S +T
Sbjct: 1696 TALNTSTPI--TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVVNSSTPIT 1753
Query: 445 SIFSMDTRNPL 477
S +++T P+
Sbjct: 1754 SSTALNTSTPI 1764
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 271 TSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVT 444
+S V + SS+++ +ST + + L + P T++ V T P T S V S +T
Sbjct: 2510 SSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPIT 2569
Query: 445 SIFSMDTRNPL 477
S+ ++++ P+
Sbjct: 2570 SLTALNSSTPI 2580
Score = 26.6 bits (56), Expect = 3.6
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 253 TFNSYWTSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTL 426
T S +S + + SS+++ ST + + L + P T++ V T P T S V
Sbjct: 2648 TSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVN 2707
Query: 427 CSIFVTSIFSMDTRNPL 477
S +TS +++T P+
Sbjct: 2708 SSTPITSSTALNTSTPI 2724
Score = 26.6 bits (56), Expect = 3.6
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 253 TFNSYWTSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTL 426
T S +S + + SS+++ ST + + L + P T++ V T P T S V
Sbjct: 2876 TSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVN 2935
Query: 427 CSIFVTSIFSMDTRNPL 477
S +TS +++T P+
Sbjct: 2936 SSTPITSSTALNTSTPI 2952
Score = 26.6 bits (56), Expect = 3.6
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 253 TFNSYWTSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTL 426
T S +S + + SS+++ ST + + L + P T++ V T P T S V
Sbjct: 2972 TSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVN 3031
Query: 427 CSIFVTSIFSMDTRNPL 477
S +TS +++T P+
Sbjct: 3032 SSTPITSSTALNTSTPI 3048
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 307 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 477
SS+++ ST + T + + P T++ V T P T S V S +TS +++T P+
Sbjct: 2258 SSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI 2316
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 307 SSSLMCASTSKPTFTSLKFNLPRTN--AVGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 477
SS+++ +ST + T + + P T+ A+ T P T S V S +TS +++T P+
Sbjct: 1730 SSTVVNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPI 1788
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 307 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 477
SS+++ ST + + L + P T++ V T P T S V S +TS +++T P+
Sbjct: 3254 SSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTTLNTSTPI 3312
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 307 SSSLMCASTSKPTFTSLKFNLPRTN--AVGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 477
SS+ + ST + + L + P T+ A+ T P T S V S +TS +++T P+
Sbjct: 662 SSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAITSSTALNTSTPI 720
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 307 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 477
SS+ + ST + + L + P T++ V T P T S V S +TS +++T P+
Sbjct: 866 SSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI 924
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 307 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 477
SS+ + ST + + L + P T++ V T P T S V S +TS +++T P+
Sbjct: 1022 SSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI 1080
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 307 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 477
SS+++ +ST + T + + P T++ V T P T S V S +TS ++T P+
Sbjct: 1166 SSTVVNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPI 1224
Score = 25.4 bits (53), Expect = 8.4
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 271 TSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVT 444
+S V + SS+++ +ST + + L + P T++ V T P T S V S +T
Sbjct: 1382 SSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPIT 1441
Query: 445 SIFSMDTRNPL 477
S ++T P+
Sbjct: 1442 SSTVVNTSTPI 1452
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 307 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 477
SS+++ +ST + T + + P T++ V T P T S V S +TS ++T P+
Sbjct: 1478 SSTVVNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPI 1536
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 307 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 477
SS+ + ST + + L + P T++ V T P T S V S +TS +++T P+
Sbjct: 1802 SSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI 1860
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 307 SSSLMCASTSKPTFTSLKFNLPRTN--AVGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 477
SS+++ ST + T + + P T+ A+ T P T S V S +TS +++T P+
Sbjct: 1826 SSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPI 1884
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 307 SSSLMCASTSKPTFTSLKFNLPRTN--AVGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 477
SS+++ ST + T + + P T+ A+ T P T S V S +TS +++T P+
Sbjct: 2018 SSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPI 2076
>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 126
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -1
Query: 551 KLNDVIIEHNEQLYNFLVSGNATYTNGFLVSIEKIDVTNMEQRVTRDIVNGASVPTAL 378
K+ + + ++Q+ ++ G+ G + S+ + + +RVTR+ NGAS P +
Sbjct: 43 KIRSLPVRRDDQIT--VIRGSNKGREGKITSVYRKKFLLLIERVTREKANGASAPVGI 98
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 122 VRNVSTKLR*CCPLACSPSGL*HWASDSTAS 214
++N++ + P+ACS + HW ++ AS
Sbjct: 776 IQNINMSIFEAFPIACSLQQIEHWVNEKVAS 806
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 6.4
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = -1
Query: 293 GAFTHILVQYELNVHKNLVSGELHTSMRLLSLMPSA-TVRMDYMPTDSITEALSRRFVPS 117
G FT ++ LNV N + G+L + + ++MPS VR D P + FV
Sbjct: 848 GRFTMPVIDNPLNVRINAILGKLRSLDKGSTIMPSLYLVRGDGDP--QLRSWFFSHFVED 905
Query: 116 MNRNSAENWGTHFASILLEKAKN 48
+ NS F L EK ++
Sbjct: 906 RSENSPSY--LQFLQTLKEKVRD 926
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,317
Number of Sequences: 5004
Number of extensions: 68196
Number of successful extensions: 231
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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