Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c02r
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0133 + 16477502-16479475                                         32   0.41 
12_02_0894 + 24087384-24087464,24087590-24088099                       30   1.6  
06_02_0224 + 13250377-13250383,13250418-13250665,13250768-13251136     29   3.8  
03_01_0327 - 2544839-2545458,2546213-2546345                           28   6.6  
11_01_0650 - 5265106-5265305,5265972-5266049,5266391-5266544,526...    28   8.8  
04_04_0705 - 27406405-27406424,27406425-27409260                       28   8.8  

>01_04_0133 + 16477502-16479475
          Length = 657

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
 Frame = -1

Query: 410 IVNGASVPTALVRGR-LNLRDVKVGFDVDAHINDELRHYTGA---FTHILVQYELNVHKN 243
           +V   S  +A+  G+ L+   +K GFD  A +   L HY G+     H  +Q++L+   +
Sbjct: 282 LVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHAQMQFKLSDKSH 341

Query: 242 LVS-GELHTSMRLLSLMPSATVRMDYMP-TDSIT-EALSRRFVPSMNRNSA 99
           + S   L  S+   +L+  A    D MP  D+I+   L   +V S N N A
Sbjct: 342 VASWNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMA 392


>12_02_0894 + 24087384-24087464,24087590-24088099
          Length = 196

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 111 VHAWYETSRQSFGDAVRWHVVHPDCSTGHQTQQPHRSMKFPRHQILVDIQFVLD*YV 281
           +H  Y   RQ   D     +   + S+GH+ +QP RS K PR  +  ++Q   D Y+
Sbjct: 31  LHRLYRIQRQLMSD-----LTMAELSSGHRRRQPRRSSKQPRRAL--NLQLPADEYI 80


>06_02_0224 + 13250377-13250383,13250418-13250665,13250768-13251136
          Length = 207

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 370 PRTNAVGTLAPFTISLVTLCSIFVTSIFSMDTRNP 474
           P+  ++GT+AP  I  +   +I V   FS  + NP
Sbjct: 122 PKKGSLGTIAPIAIGFIVGANILVAGPFSGGSMNP 156


>03_01_0327 - 2544839-2545458,2546213-2546345
          Length = 250

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 370 PRTNAVGTLAPFTISLVTLCSIFVTSIFSMDTRNPLV 480
           P+  ++GT+AP  I  +   +I V   F   + NP V
Sbjct: 165 PKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAV 201


>11_01_0650 -
           5265106-5265305,5265972-5266049,5266391-5266544,
           5266635-5266701,5266723-5266796,5266910-5267794
          Length = 485

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 567 TFFQLIN*LLNKFCVVFCVMLHSRPGVDN*IV 662
           TF +L   LLN++C + C++ HS P ++N I+
Sbjct: 307 TFTKLKTLLLNEYCALACILEHS-PVLENLIL 337


>04_04_0705 - 27406405-27406424,27406425-27409260
          Length = 951

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -1

Query: 587  VYELEKRGFCNLKLNDVIIEHNEQLYNFLVSGNATYTNGFLVSIEKI 447
            ++E+      N++ N+++ EHN +  + +V  N  + NG L+  EK+
Sbjct: 872  LFEMPSEIIQNIQNNEILQEHNHESEHTIVIKNIRWNNGKLLE-EKV 917


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,641,155
Number of Sequences: 37544
Number of extensions: 413675
Number of successful extensions: 948
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)