Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c02r
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23)                 31   1.3  
SB_21528| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  

>SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23)
          Length = 335

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -1

Query: 539 VIIEHNEQLYNFLVSGNA-TYTNGFLVSIEKIDV 441
           VIIE++  LY  L + +  TYTNGF+VS+   D+
Sbjct: 18  VIIENSVVLYLVLANRHMRTYTNGFVVSLASSDI 51


>SB_21528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 6   YDLTIKANIWERYFIFRLLQQYRSEMCSPVFSAIPVHAWYE-TSRQSFGD 152
           YD     NIW+      ++    ++ C+  F A P+ +W + TSR   GD
Sbjct: 285 YDYMANFNIWDYAINQTIIDAVYAQGCTGSFFATPILSWGQITSRPISGD 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,392,698
Number of Sequences: 59808
Number of extensions: 504641
Number of successful extensions: 1262
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)