Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c02r
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   2.2  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   3.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.8  
AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor pr...    21   9.0  
AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor pr...    21   9.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.0  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +1

Query: 37  NGILFFAFSNNIEAKCVPQFSALFLFMLGTKRLDKASVMLSVGM*SIRTVALGIRLNSL 213
           NG+LFF   NN    C  +   L    +     ++ ++ + + +  I+ +A   R+N +
Sbjct: 315 NGVLFFGLVNNSAIGCWNEHQPLQRQNMDMVAQNEKTLQMIISVKIIQNLAYSGRMNRI 373


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 153 AVRWHVVHPDCSTGHQTQQPHR 218
           A+ W+  HP+   G Q + P R
Sbjct: 116 ALEWNAAHPEEDDGGQPRPPGR 137


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 408 NIPGDSLFHIRDIYLLYGH*KP 473
           N+P + L HI + +L+Y    P
Sbjct: 24  NVPAEELIHIPEHWLVYPEPNP 45


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 385 VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 477
           +G    FT+ LVTL  +   ++ +++ R+P+
Sbjct: 299 LGKYLLFTMVLVTLSVVVTIAVLNVNFRSPV 329


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -1

Query: 497 SGNATYTNGFLVSIEKIDVTNMEQRVT----RDIVNG 399
           SGN   T   ++ I   + +N E RVT     +I+NG
Sbjct: 12  SGNWGSTIAKIIGINAANFSNFEDRVTMYVYEEIING 48


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 37  NGILFFAFSNNIEAKC 84
           NG+LFF   NN    C
Sbjct: 315 NGVLFFGLMNNSAIGC 330


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 510 QLPGIRKRDLH*RVSSVHREDR 445
           QLPG  ++    R++ ++REDR
Sbjct: 373 QLPGTGRQSELLRLNGINREDR 394


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 510 QLPGIRKRDLH*RVSSVHREDR 445
           QLPG  ++    R++ ++REDR
Sbjct: 373 QLPGTGRQSELLRLNGINREDR 394


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 356 RDVKVGFDVDAHINDELRHY 297
           +DV V   +D HI + +R Y
Sbjct: 674 KDVDVTLPLDLHIQNAIREY 693


>AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 503 LVSGNATYTNGFLVSIEKIDVTNMEQRVTRDIVNGASVPTALVRGRL-NLRDVKVGFDVD 327
           LVS  +  T+  +     +DV +    +   IV+GA+V   L+   L N+  + +  +V 
Sbjct: 18  LVSDVSAKTSISVKGESNVDVVSQINSLVSSIVSGANVSAVLLAQTLVNILQILIDANVF 77

Query: 326 A 324
           A
Sbjct: 78  A 78


>AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 503 LVSGNATYTNGFLVSIEKIDVTNMEQRVTRDIVNGASVPTALVRGRL-NLRDVKVGFDVD 327
           LVS  +  T+  +     +DV +    +   IV+GA+V   L+   L N+  + +  +V 
Sbjct: 18  LVSDVSAKTSISVKGESNVDVVSQINSLVSSIVSGANVSAVLLAQTLVNILQILIDANVF 77

Query: 326 A 324
           A
Sbjct: 78  A 78


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 368 RLNLRDVKVGFDVDAHINDE 309
           +LN +D+  G  + AHI D+
Sbjct: 155 KLNTQDIVPGVRIGAHILDD 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,928
Number of Sequences: 438
Number of extensions: 4606
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)