Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c02f
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 29 0.43
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.00
SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc... 27 2.3
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 25 9.3
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 9.3
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 29.5 bits (63), Expect = 0.43
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = -2
Query: 535 TSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNAVGTLAP-----FTISLVTLCSI 371
+S+ + +P+ +SSSL STS P T T+ +L P ++ SL+T+CS
Sbjct: 557 SSLIISSPI--ISSSLTATSTSTPALTH-SITPSNTSYTSSLIPSSSTDYSSSLITVCSN 613
Query: 370 FVTSIFS 350
+ I S
Sbjct: 614 VTSEISS 620
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 1.00
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = -2
Query: 535 TSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVT 362
T++ P+ SSS++ +ST + + L + P T++ V T P T S V S +T
Sbjct: 448 TALNTSTPI--TSSSVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPIT 505
Query: 361 SIFSMDTRNPL 329
S +++T P+
Sbjct: 506 SSTALNTSTPI 516
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -2
Query: 499 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
SSS++ +ST + + L + P T++ V T P T S V S +TS +++T P+
Sbjct: 1538 SSSVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVVNSSTPITSSTALNTSTPI 1596
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 499 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
SSS++ ST + + L + P T++ V T P T S V S +TS +++T P+
Sbjct: 1994 SSSVLNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI 2052
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = -2
Query: 535 TSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVT 362
T++ P+ SSS++ +ST + T + + P T++ V + P T S V S +T
Sbjct: 1696 TALNTSTPI--TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVVNSSTPIT 1753
Query: 361 SIFSMDTRNPL 329
S +++T P+
Sbjct: 1754 SSTALNTSTPI 1764
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = -2
Query: 535 TSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVT 362
+S V + SS+++ +ST + + L + P T++ V T P T S V S +T
Sbjct: 2510 SSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPIT 2569
Query: 361 SIFSMDTRNPL 329
S+ ++++ P+
Sbjct: 2570 SLTALNSSTPI 2580
Score = 26.6 bits (56), Expect = 3.0
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -2
Query: 553 TFNSYWTSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTL 380
T S +S + + SS+++ ST + + L + P T++ V T P T S V
Sbjct: 2648 TSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVN 2707
Query: 379 CSIFVTSIFSMDTRNPL 329
S +TS +++T P+
Sbjct: 2708 SSTPITSSTALNTSTPI 2724
Score = 26.6 bits (56), Expect = 3.0
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -2
Query: 553 TFNSYWTSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTL 380
T S +S + + SS+++ ST + + L + P T++ V T P T S V
Sbjct: 2876 TSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVN 2935
Query: 379 CSIFVTSIFSMDTRNPL 329
S +TS +++T P+
Sbjct: 2936 SSTPITSSTALNTSTPI 2952
Score = 26.6 bits (56), Expect = 3.0
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -2
Query: 553 TFNSYWTSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTL 380
T S +S + + SS+++ ST + + L + P T++ V T P T S V
Sbjct: 2972 TSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVN 3031
Query: 379 CSIFVTSIFSMDTRNPL 329
S +TS +++T P+
Sbjct: 3032 SSTPITSSTALNTSTPI 3048
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 499 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
SS+++ ST + T + + P T++ V T P T S V S +TS +++T P+
Sbjct: 2258 SSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI 2316
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -2
Query: 499 SSSLMCASTSKPTFTSLKFNLPRTN--AVGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
SS+++ +ST + T + + P T+ A+ T P T S V S +TS +++T P+
Sbjct: 1730 SSTVVNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPI 1788
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 499 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
SS+++ ST + + L + P T++ V T P T S V S +TS +++T P+
Sbjct: 3254 SSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTTLNTSTPI 3312
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 499 SSSLMCASTSKPTFTSLKFNLPRTN--AVGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
SS+ + ST + + L + P T+ A+ T P T S V S +TS +++T P+
Sbjct: 662 SSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAITSSTALNTSTPI 720
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 499 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
SS+ + ST + + L + P T++ V T P T S V S +TS +++T P+
Sbjct: 866 SSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI 924
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 499 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
SS+ + ST + + L + P T++ V T P T S V S +TS +++T P+
Sbjct: 1022 SSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI 1080
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 499 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
SS+++ +ST + T + + P T++ V T P T S V S +TS ++T P+
Sbjct: 1166 SSTVVNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPI 1224
Score = 25.4 bits (53), Expect = 7.0
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -2
Query: 535 TSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVT 362
+S V + SS+++ +ST + + L + P T++ V T P T S V S +T
Sbjct: 1382 SSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPIT 1441
Query: 361 SIFSMDTRNPL 329
S ++T P+
Sbjct: 1442 SSTVVNTSTPI 1452
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 499 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
SS+++ +ST + T + + P T++ V T P T S V S +TS ++T P+
Sbjct: 1478 SSTVVNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPI 1536
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 499 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
SS+ + ST + + L + P T++ V T P T S V S +TS +++T P+
Sbjct: 1802 SSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI 1860
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 499 SSSLMCASTSKPTFTSLKFNLPRTN--AVGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
SS+++ ST + T + + P T+ A+ T P T S V S +TS +++T P+
Sbjct: 1826 SSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPI 1884
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 499 SSSLMCASTSKPTFTSLKFNLPRTN--AVGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
SS+++ ST + T + + P T+ A+ T P T S V S +TS +++T P+
Sbjct: 2018 SSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPI 2076
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 499 SSSLMCASTSKPTFTSLKFNLPRTN--AVGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
SS+++ ST + T + + P T+ A+ T P T S V S +TS ++T P+
Sbjct: 890 SSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTGLNTSTPI 948
Score = 25.0 bits (52), Expect = 9.3
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = -2
Query: 535 TSMCVKAPV*CLSSSLMCASTSKPTFTSLKFNLPRTN--AVGTLAPFTISLVTLCSIFVT 362
+S V + SS+ + ST + + L + P T+ A+ T P T S V S +T
Sbjct: 1742 SSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPIT 1801
Query: 361 SIFSMDTRNPL 329
S +++T P+
Sbjct: 1802 SSTALNTSTPI 1812
Score = 25.0 bits (52), Expect = 9.3
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = -2
Query: 496 SSLMCASTSKPTFTS--LKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
+SL ++S P +S L + P T++ V T P T S V S +TS +++T P+
Sbjct: 2569 TSLTALNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI 2628
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 499 SSSLMCASTSKPTFTSLKFNLPRTNA--VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
SS+++ ST + T + + P T++ + T P T S V S +TS +++T P+
Sbjct: 3278 SSTVVNTSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPI 3336
>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 126
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +3
Query: 255 KLNDVIIEHNEQLYNFLVSGNATYTNGFLVSIEKIDVTNMEQRVTRDIVNGASVPTAL 428
K+ + + ++Q+ ++ G+ G + S+ + + +RVTR+ NGAS P +
Sbjct: 43 KIRSLPVRRDDQIT--VIRGSNKGREGKITSVYRKKFLLLIERVTREKANGASAPVGI 98
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.0 bits (52), Expect = 9.3
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -2
Query: 556 WTFNSYWTSMCVK 518
+T N+YW SMC++
Sbjct: 107 FTINAYWRSMCIQ 119
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +2
Query: 521 YTHTSP-IRIECPQEFGVW 574
Y P IR++C QE GVW
Sbjct: 301 YRDVEPKIRVDCLQELGVW 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,850
Number of Sequences: 5004
Number of extensions: 53221
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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