Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c02f
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0224 + 13250377-13250383,13250418-13250665,13250768-13251136     29   3.1  
12_02_0894 + 24087384-24087464,24087590-24088099                       28   5.5  
03_01_0327 - 2544839-2545458,2546213-2546345                           28   5.5  
11_01_0650 - 5265106-5265305,5265972-5266049,5266391-5266544,526...    28   7.2  
04_04_0705 - 27406405-27406424,27406425-27409260                       28   7.2  
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    27   9.6  
04_04_0721 - 27549212-27549646,27549739-27549962,27550074-275502...    27   9.6  
02_05_0194 - 26627119-26627487,26627606-26627856,26627937-26628063     27   9.6  

>06_02_0224 + 13250377-13250383,13250418-13250665,13250768-13251136
          Length = 207

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 436 PRTNAVGTLAPFTISLVTLCSIFVTSIFSMDTRNP 332
           P+  ++GT+AP  I  +   +I V   FS  + NP
Sbjct: 122 PKKGSLGTIAPIAIGFIVGANILVAGPFSGGSMNP 156


>12_02_0894 + 24087384-24087464,24087590-24088099
          Length = 196

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 626 DCSTGHQTQQPHRSMKFPRHQILVDIQFVLD*YV 525
           + S+GH+ +QP RS K PR  +  ++Q   D Y+
Sbjct: 49  ELSSGHRRRQPRRSSKQPRRAL--NLQLPADEYI 80


>03_01_0327 - 2544839-2545458,2546213-2546345
          Length = 250

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 436 PRTNAVGTLAPFTISLVTLCSIFVTSIFSMDTRNPLV 326
           P+  ++GT+AP  I  +   +I V   F   + NP V
Sbjct: 165 PKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAV 201


>11_01_0650 -
           5265106-5265305,5265972-5266049,5266391-5266544,
           5266635-5266701,5266723-5266796,5266910-5267794
          Length = 485

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -1

Query: 239 TFFQLIN*LLNKFCVVFCVMLHSRPGVDN*IV 144
           TF +L   LLN++C + C++ HS P ++N I+
Sbjct: 307 TFTKLKTLLLNEYCALACILEHS-PVLENLIL 337


>04_04_0705 - 27406405-27406424,27406425-27409260
          Length = 951

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +3

Query: 219  VYELEKRGFCNLKLNDVIIEHNEQLYNFLVSGNATYTNGFLVSIEKI 359
            ++E+      N++ N+++ EHN +  + +V  N  + NG L+  EK+
Sbjct: 872  LFEMPSEIIQNIQNNEILQEHNHESEHTIVIKNIRWNNGKLLE-EKV 917


>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 216 LVYELEKRGFCNLKLNDVIIEHNEQLYNFLVSGNATYTNGFLVSIEKID 362
           L++ +  +G C   L  V++E          SG+A  + GF  S+ +++
Sbjct: 277 LIFSVSMKGHCGFNLVPVLVEACAARMRLRASGHAPCSGGFGFSVGRLN 325


>04_04_0721 -
           27549212-27549646,27549739-27549962,27550074-27550227,
           27568477-27568821,27568899-27569152,27569257-27569383
          Length = 512

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 436 PRTNAVGTLAPFTISLVTLCSIFVTSIFSMDTRNP 332
           P+  ++GT+AP  I  +   +I     FS  + NP
Sbjct: 164 PKKGSLGTVAPMAIGFIVGANILAAGPFSGSSMNP 198


>02_05_0194 - 26627119-26627487,26627606-26627856,26627937-26628063
          Length = 248

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 436 PRTNAVGTLAPFTISLVTLCSIFVTSIFSMDTRNP 332
           P+  ++GT+AP  I  +   +I     FS  + NP
Sbjct: 163 PKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNP 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,968,165
Number of Sequences: 37544
Number of extensions: 310428
Number of successful extensions: 629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)