Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c02f
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23)                 31   1.1  
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)                   27   9.8  

>SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23)
          Length = 335

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 267 VIIEHNEQLYNFLVSGNA-TYTNGFLVSIEKIDV 365
           VIIE++  LY  L + +  TYTNGF+VS+   D+
Sbjct: 18  VIIENSVVLYLVLANRHMRTYTNGFVVSLASSDI 51


>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1847

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +3

Query: 402 NGASVPTAL-VRGRLNLRDVKVGFDVDAHINDELRHYTGAFTHILVQY----ELNVHKNL 566
           +G ++ T L  +G   +   KV  D  A     +  Y G F H   Q      LN HK+L
Sbjct: 232 DGVALQTILSAQGEFRVGSYKV--DGYAAATGTVYEYYGCFYHGWPQCFDPETLNPHKHL 289

Query: 567 VSGELHTS 590
             GELHT+
Sbjct: 290 TMGELHTN 297


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,194,719
Number of Sequences: 59808
Number of extensions: 388843
Number of successful extensions: 834
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)