Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c02f
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   4.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.8  
AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor pr...    21   7.7  
AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor pr...    21   7.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.7  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 398 NIPGDSLFHIRDIYLLYGH*KP 333
           N+P + L HI + +L+Y    P
Sbjct: 24  NVPAEELIHIPEHWLVYPEPNP 45


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 421 VGTLAPFTISLVTLCSIFVTSIFSMDTRNPL 329
           +G    FT+ LVTL  +   ++ +++ R+P+
Sbjct: 299 LGKYLLFTMVLVTLSVVVTIAVLNVNFRSPV 329


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +3

Query: 309 SGNATYTNGFLVSIEKIDVTNMEQRVT----RDIVNG 407
           SGN   T   ++ I   + +N E RVT     +I+NG
Sbjct: 12  SGNWGSTIAKIIGINAANFSNFEDRVTMYVYEEIING 48


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 296 QLPGIRKRDLH*RVSSVHREDR 361
           QLPG  ++    R++ ++REDR
Sbjct: 373 QLPGTGRQSELLRLNGINREDR 394


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 296 QLPGIRKRDLH*RVSSVHREDR 361
           QLPG  ++    R++ ++REDR
Sbjct: 373 QLPGTGRQSELLRLNGINREDR 394


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 450 RDVKVGFDVDAHINDELRHY 509
           +DV V   +D HI + +R Y
Sbjct: 674 KDVDVTLPLDLHIQNAIREY 693


>AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 303 LVSGNATYTNGFLVSIEKIDVTNMEQRVTRDIVNGASVPTALVRGRL-NLRDVKVGFDVD 479
           LVS  +  T+  +     +DV +    +   IV+GA+V   L+   L N+  + +  +V 
Sbjct: 18  LVSDVSAKTSISVKGESNVDVVSQINSLVSSIVSGANVSAVLLAQTLVNILQILIDANVF 77

Query: 480 A 482
           A
Sbjct: 78  A 78


>AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 303 LVSGNATYTNGFLVSIEKIDVTNMEQRVTRDIVNGASVPTALVRGRL-NLRDVKVGFDVD 479
           LVS  +  T+  +     +DV +    +   IV+GA+V   L+   L N+  + +  +V 
Sbjct: 18  LVSDVSAKTSISVKGESNVDVVSQINSLVSSIVSGANVSAVLLAQTLVNILQILIDANVF 77

Query: 480 A 482
           A
Sbjct: 78  A 78


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 438 RLNLRDVKVGFDVDAHINDE 497
           +LN +D+  G  + AHI D+
Sbjct: 155 KLNTQDIVPGVRIGAHILDD 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,841
Number of Sequences: 438
Number of extensions: 3447
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)