Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10c02f
(641 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49590.2 68416.m05420 expressed protein 29 2.6
At3g49590.1 68416.m05419 expressed protein 29 2.6
At3g16240.1 68416.m02049 delta tonoplast integral protein (delta... 29 2.6
At2g33400.1 68415.m04094 expressed protein 29 2.6
At3g26520.1 68416.m03310 tonoplast intrinsic protein, putative s... 29 3.5
At2g36830.1 68415.m04516 major intrinsic family protein / MIP fa... 29 3.5
At5g47450.1 68418.m05853 major intrinsic family protein / MIP fa... 27 8.0
At4g17340.1 68417.m02601 major intrinsic family protein / MIP fa... 27 8.0
At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom... 27 8.0
At3g44380.1 68416.m04768 expressed protein predicted proteins, A... 27 8.0
>At3g49590.2 68416.m05420 expressed protein
Length = 603
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/60 (36%), Positives = 28/60 (46%)
Frame = -2
Query: 478 STSKPTFTSLKFNLPRTNAVGTLAPFTISLVTLCSIFVTSIFSMDTRNPLV*VAFPDTRK 299
S S P + S N PR N AP TI + +V+S FS RNPL + TR+
Sbjct: 345 SPSTPRYIS-GGNSPRINVRPGTAPVTIPSSATLNRYVSSNFSEPGRNPLPPFSPKSTRR 403
>At3g49590.1 68416.m05419 expressed protein
Length = 603
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/60 (36%), Positives = 28/60 (46%)
Frame = -2
Query: 478 STSKPTFTSLKFNLPRTNAVGTLAPFTISLVTLCSIFVTSIFSMDTRNPLV*VAFPDTRK 299
S S P + S N PR N AP TI + +V+S FS RNPL + TR+
Sbjct: 345 SPSTPRYIS-GGNSPRINVRPGTAPVTIPSSATLNRYVSSNFSEPGRNPLPPFSPKSTRR 403
>At3g16240.1 68416.m02049 delta tonoplast integral protein
(delta-TIP) identical to delta tonoplast integral
protein (delta-TIP) (GI:9279707)(GB:U39485) [Arabidopsis
thaliana] (Plant Cell 8 (4), 587-599 (1996))
Length = 250
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 436 PRTNAVGTLAPFTISLVTLCSIFVTSIFSMDTRNP 332
P+ ++GT+AP I L+ +I FS + NP
Sbjct: 164 PKKGSLGTIAPLAIGLIVGANILAAGPFSGGSMNP 198
>At2g33400.1 68415.m04094 expressed protein
Length = 272
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 258 LNDVIIEHNEQLYNFLVSGNATYTNGFLVSIEKIDVTNMEQR 383
L ++I+ N L N+L S + + NG +D+TNME R
Sbjct: 233 LKEIIV--NTSLSNWLASPKSLHANGSSKRSPIVDITNMENR 272
>At3g26520.1 68416.m03310 tonoplast intrinsic protein, putative
similar to tonoplast intrinsic protein GI:5081419 from
[Brassica napus]
Length = 253
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 436 PRTNAVGTLAPFTISLVTLCSIFVTSIFSMDTRNPLV 326
P+ ++GT+AP I + +I FS + NP V
Sbjct: 167 PKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAV 203
>At2g36830.1 68415.m04516 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 251
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 436 PRTNAVGTLAPFTISLVTLCSIFVTSIFSMDTRNPLV 326
P+ ++GT+AP I + +I FS + NP V
Sbjct: 166 PKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAV 202
>At5g47450.1 68418.m05853 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 250
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 436 PRTNAVGTLAPFTISLVTLCSIFVTSIFSMDTRNP 332
P+ ++GT+AP I + +I FS + NP
Sbjct: 164 PKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNP 198
>At4g17340.1 68417.m02601 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 250
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 436 PRTNAVGTLAPFTISLVTLCSIFVTSIFSMDTRNP 332
P+ ++GT+AP I + +I FS + NP
Sbjct: 164 PKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNP 198
>At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM
domain-containing protein low similarity to GLUT4
vesicle protein [Rattus norvegicus] GI:4193489; contains
Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
Length = 594
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 261 NDVIIEHNEQLYNFLVSGNATYTNGFLVSIEKIDVTNMEQRVTRDIVNG 407
NDV EQ+ N L++ ++TYTN + S K N+E T + +G
Sbjct: 408 NDVFASTPEQVLNVLLADDSTYTNEYR-SARKDKNLNIEPWHTAEEYDG 455
>At3g44380.1 68416.m04768 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 186
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = -2
Query: 577 SPDTKFLWTFNSYWTSMCVKAPV*CLSSSLMCASTSKPTF-------TSLKFNLPRTNA 422
S D K W+ W+S + A ++SL+ A PTF TSLK NLP +A
Sbjct: 3 SRDQKVKWS----WSSALIGAASATAAASLLSAKPKDPTFHLISIDLTSLKLNLPVLDA 57
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,286,356
Number of Sequences: 28952
Number of extensions: 266699
Number of successful extensions: 686
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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