Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c01r
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    30   2.1  
01_06_0248 + 27862048-27864310,27864331-27864776                       29   3.7  
08_02_1365 - 26423915-26423953,26424409-26424492,26424543-264245...    28   8.6  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 332 AGIIWVVF*WDFKNRRYWCRVRINHMSDQFSNVLIDENDVNVIAFNK 472
           +G+   VF WD +  +  C   I H   QFS+V ++ ++  V A  K
Sbjct: 517 SGLDGAVFMWDMRLSKKHCLELIGHPESQFSSVKLNIDNRTVFAATK 563


>01_06_0248 + 27862048-27864310,27864331-27864776
          Length = 902

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 486 SSISLTGVFLSTTMKFGCLFLLISPMPPSKNPTQVSSSPITLI 614
           S +    + L T+M   C+FL++      KNP  + ++ IT++
Sbjct: 603 SRVDTERIMLVTSMTLSCVFLVLQLRHARKNPDALPATSITML 645


>08_02_1365 -
           26423915-26423953,26424409-26424492,26424543-26424577,
           26425469-26425697
          Length = 128

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 523 P*NSDVCFY*SHRCPRVRIRRKCPHPR*H 609
           P ++ +CF  SHR      +R+CP PR H
Sbjct: 6   PQHAILCFLLSHRPSPTPSQRRCPDPRMH 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,689,125
Number of Sequences: 37544
Number of extensions: 360768
Number of successful extensions: 908
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)