Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10c01f
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    24   1.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    24   1.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.0  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 497 QCQSVNGHQKH 465
           QCQ+VNGH  H
Sbjct: 35  QCQAVNGHCSH 45


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 497 QCQSVNGHQKH 465
           QCQ+VNGH  H
Sbjct: 35  QCQAVNGHCSH 45


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 158 PPSKNPTQVSSSPITLIN 105
           PPS+NP+Q+  SP + I+
Sbjct: 55  PPSQNPSQMMISPASGIH 72


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 419 PLARRRMESLLASYGWSFDGI 357
           PL R+     +ASYGW+ D +
Sbjct: 168 PLDRQVCSLRMASYGWTTDDL 188


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 419 PLARRRMESLLASYGWSFDGI 357
           PL R+     +ASYGW+ D +
Sbjct: 168 PLDRQVCSLRMASYGWTTDDL 188


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 67  SKNMALHAAVKGKLISVIGDEDTCVG 144
           + ++ L  AVK  L SV   E TC G
Sbjct: 477 ASDVTLDEAVKSPLGSVSSTESTCSG 502


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 502 IYNANPSTDIKNMQHISISVPSRLG 428
           +YN N   +I +M H   ++ S+ G
Sbjct: 201 MYNNNTEWEIVHMSHSESTIDSKFG 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,616
Number of Sequences: 438
Number of extensions: 3847
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)