Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b24r
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...   144   1e-35
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...   126   4e-30
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    31   0.20 
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    26   4.4  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   7.7  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   7.7  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 778

 Score =  144 bits (348), Expect = 1e-35
 Identities = 69/112 (61%), Positives = 81/112 (72%), Gaps = 1/112 (0%)
 Frame = -3

Query: 679  EHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANAADYDKIKPDDKISLLGLNS 500
            EHAALEPR+LGG A+I KSFARIHETNLKKQG+LPLTFA+ A YDKI P D + + GL +
Sbjct: 667  EHAALEPRYLGGAAVITKSFARIHETNLKKQGLLPLTFADPAAYDKISPFDTVDIDGLTT 726

Query: 499  LAPGKPVDCEIKHKDGSTD-RIKLNHSLNDQQINWFKAGSALNRMKEIASGK 347
             APGKP+   +   DGS +   KLNH+ N  QI WFKAGSALN M  +   K
Sbjct: 727  FAPGKPLTLVVHPADGSAEWSTKLNHTFNKDQIEWFKAGSALNHMANMHKQK 778


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 905

 Score =  126 bits (303), Expect = 4e-30
 Identities = 61/111 (54%), Positives = 78/111 (70%), Gaps = 3/111 (2%)
 Frame = -3

Query: 679  EHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANAADYDKIKPDDKISLLGLNS 500
            EHAAL+PR + GR I+ KSFARIHETNLKKQG+LPLTF N ADY+KI  +DK+S  G+  
Sbjct: 676  EHAALQPRAMNGRIILTKSFARIHETNLKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQ 735

Query: 499  LAPG---KPVDCEIKHKDGSTDRIKLNHSLNDQQINWFKAGSALNRMKEIA 356
            L  G   +P+   +  KDGS   I   H+++  QI +FKAGSALN ++E A
Sbjct: 736  LLEGVLDQPITLVVTKKDGSVVEIPCKHTMSKDQIEFFKAGSALNLIREKA 786


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -3

Query: 679 EHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPL 572
           EHA       G R II  SFA I   N  K GMLP+
Sbjct: 620 EHAPWALNDFGIRVIIAPSFADIFFNNCFKNGMLPI 655


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 661 PRHLGGRAIIVKSFARIHETNLKKQGML 578
           P HLG  +  V++ A+IHE  LK   +L
Sbjct: 805 PVHLGSMSTCVRTQAKIHEGKLKPGDVL 832


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 304 SNASVSFNTNLFSFTFRKRFPSFC 375
           SN   +FN+ LF F F    PS C
Sbjct: 197 SNFPSNFNSELFPFYFHDVVPSIC 220


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/54 (24%), Positives = 21/54 (38%)
 Frame = -3

Query: 601 NLKKQGMLPLTFANAADYDKIKPDDKISLLGLNSLAPGKPVDCEIKHKDGSTDR 440
           N   QG+ P  F +  D   ++P   +S    +S     P    I     S+D+
Sbjct: 50  NTNTQGIFPSNFVHCLDIPTVRPGSSMSRTSASSFRYSSPQKSSIDTPITSSDQ 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,299
Number of Sequences: 5004
Number of extensions: 40303
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)