Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b24r
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_52468| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 910

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
 Frame = -3

Query: 673  AALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTF--ANAADYDKIKPDDKISLLGLNS 500
            AA  P   G RA++ +S+ RIH +NL   G++PL F    +A+   +   +  ++     
Sbjct: 804  AAKGPWMQGVRAVVAQSYERIHRSNLVGMGIIPLQFLEGESAETLGLTGQEAYNINLPQE 863

Query: 499  LAPGKPVDCEIKHKDGSTDRIKLNHSLNDQQINWFKAGSALNRM 368
            L+ G+ +D  +   DG + + K+     D ++ +FK G  LN M
Sbjct: 864  LSTGQVIDVSL--SDGRSFKAKVRFD-TDVELTYFKHGGILNYM 904


>SB_52468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = +3

Query: 36  ENIATYTKFIYLY*YNLIRFTAVTKYCLRNALMYYLNYTMTRLHWLHLIPLKRLQYSRVN 215
           E + T T+      Y L RF A  KY   NA   Y   T+TRL+   +  L R    ++ 
Sbjct: 32  EKMYTLTRLNANRMYTLTRFNAERKYTRLNAEKMY---TLTRLNAEKMYTLTRFNAEKMY 88

Query: 216 TISHIKATR 242
           T++ + A R
Sbjct: 89  TLTRLNAER 97



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +3

Query: 78  YNLIRFTAVTKYCLRNALMYYLNYTMTRLHWLHLIPLKRLQYSRVNTISHIKATR----- 242
           Y L R  A   Y L   L     YT+TRL+   +  L RL  +R+ T++   A R     
Sbjct: 2   YTLTRLNAEKMYTLTR-LNAEKMYTLTRLNAEKMYTLTRLNANRMYTLTRFNAERKYTRL 60

Query: 243 NAPKQY 260
           NA K Y
Sbjct: 61  NAEKMY 66


>SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = +3

Query: 27  YIHENIATYTKFIYLY*YNLIRFTAVTKYCLRNALMYYLNYTMTRLHWLHLIPLKRLQYS 206
           +   N   YT+ +    YN +R+T +  +   N + Y      TR + +    L  + ++
Sbjct: 467 FTRHNPVRYTELVVFTRYNPVRYTELVVFTRHNPVRYAQLMVFTRYNPVRYAQL--IVFT 524

Query: 207 RVNTISHIKA---TRNAPKQY 260
           R N + + K    TR  P +Y
Sbjct: 525 RYNPVRYAKLIVFTRYNPVRY 545


>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1189

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -3

Query: 562 NAADYDKIKPDDKISLLGLNSLAPGKPVDCEIKHKDGSTDRIKLNHSLNDQQINW 398
           N  DY+      K+ + GL+S    +PV  ++   D +    K+ HSL D  I W
Sbjct: 167 NNLDYEIRSRIVKLQVAGLSSKITIEPVTSQVIFGDVARLFCKVRHSLPDSIIQW 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,714,190
Number of Sequences: 59808
Number of extensions: 293370
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)