Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b24r
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05710.1 68415.m00611 aconitate hydratase, cytoplasmic, putat...    42   4e-04
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat...    42   5e-04
At4g35830.1 68417.m05090 aconitate hydratase, cytoplasmic / citr...    41   9e-04
At1g09890.1 68414.m01113 expressed protein ; expression supporte...    29   2.2  
At5g26570.1 68418.m03152 glycoside hydrolase starch-binding doma...    28   6.6  
At1g76490.1 68414.m08899 3-hydroxy-3-methylglutaryl-CoA reductas...    28   6.6  
At1g69650.1 68414.m08015 meprin and TRAF homology domain-contain...    28   6.6  
At2g34410.1 68415.m04217 O-acetyltransferase family protein simi...    27   8.7  

>At2g05710.1 68415.m00611 aconitate hydratase, cytoplasmic, putative /
            citrate hydro-lyase/aconitase, putative nearly identical
            to SP|P49608 Aconitate hydratase, cytoplasmic (EC
            4.2.1.3) (Citrate hydro-lyase) (Aconitase) {Cucurbita
            maxima}; contains Pfam profiles PF00330: Aconitase family
            (aconitate hydratase), PF00694: Aconitase C-terminal
            domain
          Length = 990

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = -3

Query: 673  AALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANAADYDKI 539
            AA  P   G +A+I KSF RIH +NL   G++PL F +  D D +
Sbjct: 880  AAKGPMLQGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTL 924


>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative /
            citrate hydro-lyase/aconitase, putative strong similarity
            to SP|P49608 Aconitate hydratase, cytoplasmic (EC
            4.2.1.3) (Citrate hydro-lyase) (Aconitase) {Cucurbita
            maxima}; contains Pfam profiles PF00330: Aconitase family
            (aconitate hydratase), PF00694: Aconitase C-terminal
            domain
          Length = 995

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = -3

Query: 673  AALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANAADYDKI 539
            AA  P  LG +A+I KSF RIH +NL   G++PL F    D + +
Sbjct: 885  AAKGPLLLGVKAVIAKSFERIHRSNLAGMGIIPLCFKAGEDAETL 929


>At4g35830.1 68417.m05090 aconitate hydratase, cytoplasmic / citrate
           hydro-lyase / aconitase (ACO) identical to SP|Q42560
           Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate
           hydro-lyase) (Aconitase) {Arabidopsis thaliana};
           contains Pfam profiles PF00330: Aconitase family
           (aconitate hydratase), PF00694: Aconitase C-terminal
           domain
          Length = 898

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = -3

Query: 673 AALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANAADYDKI 539
           AA  P  LG +A+I KSF RIH +NL   G++PL F    D + +
Sbjct: 788 AAKGPMLLGVKAVISKSFERIHRSNLVGMGIIPLCFKAGEDAETL 832


>At1g09890.1 68414.m01113 expressed protein ; expression supported
           by MPSS
          Length = 633

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
 Frame = +2

Query: 344 SLSGSDFLHSVERRAGLEPVDLLVVQRMVELDAVGAAVFVLNFAVHWLAGSEAVQSKE*D 523
           S   SD     E+R  +    LLV  R V+ D + A    +  AV   AGS   + KE  
Sbjct: 321 SFPASDDYVKTEQRGNVVG-RLLVQDRYVDKDFIAANRGYVGLAVPGAAGSWQRECKEYQ 379

Query: 524 FIVRLD---LVVVSGVGEREGQHTLFLQVGLVDSSERLDD 634
           F  R D      +SG+  R GQ+ L+  +       + DD
Sbjct: 380 FWTRTDEEGFFYISGI--RPGQYNLYAWIPGFIGDYKYDD 417


>At5g26570.1 68418.m03152 glycoside hydrolase starch-binding
           domain-containing protein similar to SEX1 (starch
           excess) [Arabidopsis thaliana] GI:12044358; contains
           Pfam profile PF00686: Starch binding domain
          Length = 1191

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 466 KHKDGSTDRIKLNHSLNDQQINWFKAGSALNRMKEIASGK 347
           K KDGS  +++LN  L D Q+N+    +     KEI S K
Sbjct: 65  KKKDGSGTKVRLNVRL-DHQVNFGDHVAMFGSAKEIGSWK 103


>At1g76490.1 68414.m08899 3-hydroxy-3-methylglutaryl-CoA reductase 1
           / HMG-CoA reductase 1 (HMG1) identical to HMG-CoA
           reductase 1 [SP|P14891]
          Length = 592

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 299 IGPMQALVLTLIYLVSLSGSDFLHSVERRAGLEPVDL 409
           +G + AL+ + IYL+   G DF+ S   RA  +  DL
Sbjct: 95  LGAIIALIASFIYLLGFFGIDFVQSFISRASGDAWDL 131


>At1g69650.1 68414.m08015 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 294

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 652 LGGRAIIVKSFARIHETNLKKQGMLPLTFANAADYDKIKPDDKI 521
           +GGR  ++K F +    N + +G     F   AD + +KPD+KI
Sbjct: 182 IGGREWVLKLFPK---GNSRAKGKYLSVFLYLADNETLKPDEKI 222


>At2g34410.1 68415.m04217 O-acetyltransferase family protein similar
           to O-acetyltransferase (GI:17016934) [Homo sapiens];
           contains 11 transmembrane domains
          Length = 540

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 33  HENIATYTKFIYLY*YNLIRFTAVTKY-CLRNALMYYLNYTMTRLHWLHLIPLK 191
           +E I    K  Y   +    +  +T Y CLRN+     N++MT   WL  I L+
Sbjct: 393 YEYIYKLDKVTYNKYHPYTSWIPITVYICLRNSTQQLRNFSMTLFAWLGKITLE 446


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,687,655
Number of Sequences: 28952
Number of extensions: 203373
Number of successful extensions: 562
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)