Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b24f
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842...    31   0.67 
01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951           28   6.2  
05_07_0296 - 29061900-29061923,29062026-29062440,29062529-290625...    27   8.2  
04_04_0352 + 24619621-24619757,24620102-24620411,24621022-246214...    27   8.2  
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288...    27   8.2  

>09_02_0607 -
           11183382-11183387,11183481-11183637,11184220-11184284,
           11184397-11184469,11184759-11184905,11185515-11185562,
           11185637-11185716,11186112-11186439,11186525-11186576,
           11187397-11187523,11187613-11187990
          Length = 486

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 224 GFQRVPPLSCYPGHAKLSYSAPWSPD 147
           GF+R+P L C+P   +L+    WSP+
Sbjct: 202 GFKRIPSLECWPDVLQLTEPENWSPN 227


>01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951
          Length = 563

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 314 FRKARVPCRTWTSPPGPRRRSME 246
           FR+AR   R +TSPP P+RR  E
Sbjct: 160 FREARASSRRFTSPP-PKRRGSE 181


>05_07_0296 -
           29061900-29061923,29062026-29062440,29062529-29062566,
           29062689-29062741,29062851-29063034,29064486-29064669,
           29064761-29064916,29064998-29065173,29065277-29065454,
           29066015-29066421
          Length = 604

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 368 LSEKILYSHLDDPKGQEIERGASYLRLRPDRVA-MQDATAQMAMLQFISSGLPRVAVPST 544
           LS  +L+S  DDP+  +    AS + L PDR+A +  A A        S G P  A    
Sbjct: 20  LSRALLFSQ-DDPEPVKRPDEASSISLPPDRIAIIAAAPAPSPATAAASDGSPAPA-QDE 77

Query: 545 IHCD 556
           + CD
Sbjct: 78  VRCD 81


>04_04_0352 +
           24619621-24619757,24620102-24620411,24621022-24621429,
           24621773-24622357
          Length = 479

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 23/82 (28%), Positives = 38/82 (46%)
 Frame = +2

Query: 212 LSEIQQRCFSVSPLTAAAAQVAMSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYS 391
           ++E QQ+   V+ +  +    A  K  K      +  K+L   KKR  + +T  EKILY 
Sbjct: 87  IAEPQQKQEDVALVDESGRPKAKRKKLKGRRAVTRFLKSLRWKKKREFQRMTAEEKILYK 146

Query: 392 HLDDPKGQEIERGASYLRLRPD 457
            L   + +E    A+  ++ PD
Sbjct: 147 -LKLARNKEERLVAALTKIEPD 167


>03_02_0936 -
           12528336-12528379,12528516-12528602,12528696-12528809,
           12528895-12529120,12529200-12529523,12529603-12529773,
           12529870-12530100,12530291-12530479,12531176-12531178
          Length = 462

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 254 TAAAAQVAMSKFDKVPLPYEKLTKNLEVVKKR 349
           TAA A   M+ F+ VPLPY+      E+ +KR
Sbjct: 19  TAAVAPPRMADFNHVPLPYDG-PSAAEIARKR 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,838,118
Number of Sequences: 37544
Number of extensions: 354718
Number of successful extensions: 970
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)