Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b24f
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)               39   0.003
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   28   4.8  
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)                     28   4.8  
SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)                    28   6.4  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_43494| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_46732| Best HMM Match : AAA (HMM E-Value=0.044)                     27   8.5  
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)
          Length = 193

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = +2

Query: 512 SGLPRVAVPSTIHCDHLIEAQVG 580
           S   +VAVPSTIHCDHLIEA+ G
Sbjct: 102 SSWQKVAVPSTIHCDHLIEAKDG 124


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 500  VTLPFVQWRLAWPHGRDAGGDNLRRVQFPVLWGHPS 393
            +TLP  +W++A+  G     +N R+V + VL+G  S
Sbjct: 943  LTLPLRRWKIAFRFGAGTSDNNGRKVFYTVLFGQSS 978


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 529 YTGKAGRDKL*HCHLCSGVLHG 464
           + G AG+DK+  C +CS   HG
Sbjct: 824 FCGSAGKDKMFFCKVCSEPFHG 845


>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
          Length = 458

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 529 YTGKAGRDKL*HCHLCSGVLHG 464
           + G AG+DK+  C +CS   HG
Sbjct: 165 FCGSAGKDKMFFCKVCSEPFHG 186


>SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)
          Length = 387

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 294 LSNLDIATWAAAAVNGDTLKH 232
           L N+ IATWA    N +T KH
Sbjct: 142 LRNVAIATWALVLANSNTFKH 162


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 248  PLTAAAAQVAMSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQ--EI 421
            PL AA  +    KFDKV  PY  L   L  ++ RL      S++   S  DD +G+  EI
Sbjct: 3153 PLVAAGIK---DKFDKVKRPYHDLVAKLSDLEGRLQAAQMRSQEFQQS-FDDFRGRLDEI 3208

Query: 422  E 424
            E
Sbjct: 3209 E 3209


>SB_43494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -3

Query: 415 LSFGVIQVRI*DFLRQGQFSP*PLLNHL*ILRQLFV 308
           L F ++Q  + D+L+Q +F+P PL +   I++Q+ V
Sbjct: 174 LVFEMLQQNLYDYLKQSKFNPLPLKHIRPIVQQVLV 209


>SB_46732| Best HMM Match : AAA (HMM E-Value=0.044)
          Length = 430

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/105 (19%), Positives = 42/105 (40%)
 Frame = +2

Query: 182 HGQGSRTRVVLSEIQQRCFSVSPLTAAAAQVAMSKFDKVPLPYEKLTKNLEVVKKRLGRE 361
           H Q +     L E  ++      +    A +   + D+V +  E+  K L    ++  + 
Sbjct: 74  HAQKALDLAKLQESTKQLEKQEKIKEYEAGINQMQLDRVRVEQEEKRKTLSAETQQHQQR 133

Query: 362 LTLSEKILYSHLDDPKGQEIERGASYLRLRPDRVAMQDATAQMAM 496
               +++     +D  GQ+ +     LR + + V  Q+A  + AM
Sbjct: 134 AQYEDQLARKRYNDQLGQQRQMQEENLRKQEESVKRQEAIRRYAM 178


>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2123

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 221 FQRVPPLSCYPGHAKLSYSAPWSPDFSILNELI 123
           F R   L CYP   +L  S P +PD+  +  L+
Sbjct: 676 FTRADKLWCYPPQPQLISSQPPNPDYYFIQPLL 708


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,551,498
Number of Sequences: 59808
Number of extensions: 373506
Number of successful extensions: 995
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)