Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b24f
(582 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22820.1 68418.m02668 expressed protein 29 1.7
At2g25730.1 68415.m03084 expressed protein 29 1.7
At5g24310.1 68418.m02861 expressed protein strong similarity to ... 28 4.0
At2g21380.1 68415.m02544 kinesin motor protein-related 28 4.0
At3g49290.1 68416.m05387 expressed protein 28 5.2
At2g15680.1 68415.m01795 calmodulin-related protein, putative si... 28 5.2
At4g33150.2 68417.m04723 lysine-ketoglutarate reductase/saccharo... 27 6.9
At4g33150.1 68417.m04722 lysine-ketoglutarate reductase/saccharo... 27 6.9
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 27 6.9
At1g61850.1 68414.m06979 patatin family protein similar to membr... 27 6.9
At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138... 27 6.9
At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138... 27 6.9
At3g20150.1 68416.m02554 kinesin motor family protein contains P... 27 9.1
At1g21970.1 68414.m02749 CCAAT-box binding transcription factor ... 27 9.1
>At5g22820.1 68418.m02668 expressed protein
Length = 490
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 294 LSNLDIATWAAAAVNGDTLKHLCWISEST 208
LS +WA + D L+H+ WI+E+T
Sbjct: 232 LSGAGCTSWAHCLESDDILRHILWIAENT 260
>At2g25730.1 68415.m03084 expressed protein
Length = 2464
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 432 QVISACVPTVWPCKTPLHKWQCYNLSLPAFP 524
+VISACVP V+P ++ H W C + +P P
Sbjct: 1081 EVISACVPPVYPPRSG-HGWACIPV-IPTTP 1109
>At5g24310.1 68418.m02861 expressed protein strong similarity to
unknown protein (emb|CAB66408.1)
Length = 321
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 248 PLTAAAAQVAMSK-FDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDD 403
P +A+ +VA K K P ++ +K+ ++K L R T + LY++LD+
Sbjct: 268 PRRSASVRVAFEKEAQKEPEHQQQPSKSKRLLKALLSRRKTKKDDTLYTYLDE 320
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 282 DIATWAAAAVNGDTLKHLCWIS-ESTTLVLLPWPCKTLIQC 163
++ + AAAA N D H+C + ES T +L PC+ C
Sbjct: 993 EMKSQAAAAANADANSHICKVCFESPTATIL-LPCRHFCLC 1032
>At3g49290.1 68416.m05387 expressed protein
Length = 312
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 248 PLTAAAAQVAMSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDD 403
P +A+ +VA K ++ ++ +K+ ++K L R T + LY+ LD+
Sbjct: 260 PRRSASVRVAFEKDNQKETEQQQPSKSKRLLKALLSRRKTKKDDTLYTFLDE 311
>At2g15680.1 68415.m01795 calmodulin-related protein, putative
similar to calmodulin-related protein 2, touch-induced
SP:P25070 from [Arabidopsis thaliana]
Length = 187
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -2
Query: 572 GLRSSD-HNEWWTVQLHGEGR 513
G+RSSD N +WT L+G+G+
Sbjct: 116 GIRSSDIRNSFWTFDLNGDGK 136
>At4g33150.2 68417.m04723 lysine-ketoglutarate
reductase/saccharopine dehydrogenase bifunctional enzyme
identical to lysine-ketoglutarate reductase/saccharopine
dehydrogenase GI:2052508 from [Arabidopsis thaliana]
Length = 1064
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 146 SPATMAHCMRVLHGQGSRTRV 208
+P T +HC R+LHG RT +
Sbjct: 31 TPLTPSHCARLLHGGKDRTGI 51
>At4g33150.1 68417.m04722 lysine-ketoglutarate
reductase/saccharopine dehydrogenase bifunctional enzyme
identical to lysine-ketoglutarate reductase/saccharopine
dehydrogenase GI:2052508 from [Arabidopsis thaliana]
Length = 1064
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 146 SPATMAHCMRVLHGQGSRTRV 208
+P T +HC R+LHG RT +
Sbjct: 31 TPLTPSHCARLLHGGKDRTGI 51
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Frame = +2
Query: 260 AAAQVAMSKFDKVPLPYEKLTK-----NLEVVKKRLGREL----TLSEKILYSHLDDPKG 412
AAA + F+ VP PY+K+ + L+V++ + G + LS ++ ++H D K
Sbjct: 101 AAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKE 160
Query: 413 QEIER 427
E++R
Sbjct: 161 LEVKR 165
>At1g61850.1 68414.m06979 patatin family protein similar to
membrane-associated calcium-independent phospholipase A2
gamma; IPLA2 gamma [Homo sapiens] GI:8453174; contains
Patatin domain PF01734, PF00514:
Armadillo/beta-catenin-like repeat
Length = 1265
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -2
Query: 296 PCRTWTSPPGPRRRSMEIR*NIFVGFQRVPPLSCYPGH-AKLSYSAPWSP 150
P T + PP P + E+ F VPPLS GH K S P SP
Sbjct: 915 PLITGSLPPSPLLFTPELGPQKFNRIDMVPPLSLDGGHVGKTVMSPPSSP 964
>At1g52630.2 68414.m05942 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 351
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 227 QRCFSVSPLTAAAAQVAMSKFDKVPLPYEKLTKNLE 334
Q C+S LT++ + A+ FD +P P+ L E
Sbjct: 119 QACYSAIHLTSSLEKKAVELFDAIPKPFLSLHLRFE 154
>At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 439
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 227 QRCFSVSPLTAAAAQVAMSKFDKVPLPYEKLTKNLE 334
Q C+S LT++ + A+ FD +P P+ L E
Sbjct: 207 QACYSAIHLTSSLEKKAVELFDAIPKPFLSLHLRFE 242
>At3g20150.1 68416.m02554 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1114
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 263 AAQVAMSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKIL 385
+A A KF++V EKL K +E +K+R E+ +K L
Sbjct: 1049 SASAAEEKFNEVEEENEKLKKKMEKLKRRHKLEVVTIKKSL 1089
>At1g21970.1 68414.m02749 CCAAT-box binding transcription factor
(LEC1) similar to CAAT-box DNA binding protein subunit B
(NF-YB) (SP:P25209) (GI:22380) [Zea mays]; identical to
GB:AAC39488 GI:3282674 from [Arabidopsis thaliana] (Cell
93 (7), 1195-1205 (1998)); identified in Plant Cell 2003
Jan;15(1):5-18; contains Pfam PF00808 : Histone-like
transcription factor (CBF/NF-Y) and archaeal histone
Length = 238
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 565 DQVITMNGGRYSYTGKAGRDK 503
DQ + M GGRY G +G+D+
Sbjct: 194 DQSMVMGGGRYYQNGSSGQDE 214
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,922,247
Number of Sequences: 28952
Number of extensions: 262711
Number of successful extensions: 630
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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