Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b22r
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 33 0.16
At5g52490.1 68418.m06512 fibrillarin, putative similar to fibril... 31 0.50
At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re... 31 0.66
At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family... 29 2.7
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 29 3.5
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 3.5
At1g66400.1 68414.m07541 calmodulin-related protein, putative si... 29 3.5
At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related... 28 6.2
At1g30780.1 68414.m03763 F-box family protein 28 6.2
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 27 8.2
At4g08350.1 68417.m01380 KOW domain-containing transcription fac... 27 8.2
At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327 27 8.2
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 33.1 bits (72), Expect = 0.16
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = -1
Query: 532 LVDTYEPISVGPALVDTYVPISVGPALVDTYEPISVGPALVDTYEPISVGP---AIVEGA 362
L T P+ V A V +P++ P P+S + +P+SVGP A V+
Sbjct: 242 LPQTQSPVKVDRATVAPSIPVTGQPPA-----PVSSANGPIQNRQPVSVGPVPTATVKVE 296
Query: 361 PVTVTGADGTPLVQIIINVNRPS 293
P TVT P I V RP+
Sbjct: 297 PSTVTSMAPVPSFPHIPAVARPA 319
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/72 (26%), Positives = 28/72 (38%)
Frame = -1
Query: 415 LVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPE 236
L T P+ V A V + + VTG P+ + ++ PV + EP
Sbjct: 242 LPQTQSPVKVDRATVAPS-IPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTV 300
Query: 235 VVILPTPVFPEI 200
+ P P FP I
Sbjct: 301 TSMAPVPSFPHI 312
>At5g52490.1 68418.m06512 fibrillarin, putative similar to
fibrillarin from {Xenopus laevis} SP|P22232, {Mus
musculus} SP|P35550, {Homo sapiens} SP|P22087
Length = 292
Score = 31.5 bits (68), Expect = 0.50
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = +2
Query: 347 GDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRSNRDGFVGV 526
G + RG+ G S R G KS SDG G+ G +K H GV ++S D V
Sbjct: 24 GSAVRGSGRGGESGRGRGPGRVKSESDG-GIKGGSKVLVTPHRHAGVFVAKSKADALVTK 82
Query: 527 N 529
N
Sbjct: 83 N 83
>At3g27550.1 68416.m03443 group II intron splicing factor
CRS1-related contains weak similarity to CRS1 [Zea mays]
gi|9837550|gb|AAG00595
Length = 491
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 311 DDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRS 424
DDD DE +SA S + F N S+RDG + +KS+S
Sbjct: 445 DDDEDENRTVSASSSKQSRFRN-NSSRDG-INNSKSKS 480
>At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family
protein
Length = 242
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -1
Query: 478 VPISVGPALVDTYE-PISVGPALVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVN 302
VP+S G + P +GP + P GP+ E VTV G DG P +N
Sbjct: 140 VPVSEGGVISSPSSYPWPLGPREGSAFSP---GPSPSEITSVTVPGKDGVPF------IN 190
Query: 301 RPSEIAADPVDVEDIAEEPLP 239
+ DV+ + PLP
Sbjct: 191 SNPAVPLPTGDVDSTSINPLP 211
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 98 KSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQR 247
+S G DR + + G FG R+G R+ F +GS ++ G R
Sbjct: 552 RSPEGYGSDRSSQSGGRSSFGGGRSGGSSNNRSSGFGDFGSDRSSQSGGR 601
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 28.7 bits (61), Expect = 3.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 314 DDLDEGSAIS-AGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVN 490
DD GS + DS G +N DG G N + ++ + N +N D + G N
Sbjct: 47 DDSSNGSPQPPSSDSQSPPSPQGNNNNDGNNGNNNNDNNNN-----NNGNNNNDNNNGNN 101
Query: 491 KSRSNRDGFVGVNKSRSNGDG 553
K +N G N + +N +G
Sbjct: 102 KDNNNN----GNNNNGNNNNG 118
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +2
Query: 323 DEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRS 502
D S S ++ NNG +N D N ++ D G NK +N + N +
Sbjct: 60 DSQSPPSPQGNNNNDGNNGNNNNDN-NNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNG 118
Query: 503 NRDGFVGVNKSRSNGD 550
N + G N + +N D
Sbjct: 119 NDNN--GNNNNGNNND 132
>At1g66400.1 68414.m07541 calmodulin-related protein, putative
similar to calmodulin-related protein 2, touch-induced
from SP:P25070 [Arabidopsis thaliana]; contains Pfam
profile: PF00036 EF hand (4 copies)
Length = 157
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 317 DLDEGSAISAGDSHRGTFNNGR--SNRDGLVGVNKSRSDGDGLV 442
DLD ISA + H N G S +D +NK SDGDG V
Sbjct: 99 DLDRNGRISANELHSVMKNLGEKCSIQDCQRMINKVDSDGDGCV 142
>At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 244
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 263 LNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDG 397
+N+N S + T ++ DL G + S GDS+ NN S+ DG
Sbjct: 142 MNMNNYSSHALSTDDINLDLTLGPSKSIGDSNNIINNNTNSSFDG 186
>At1g30780.1 68414.m03763 F-box family protein
Length = 482
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 277 PVDVEDIAEEPLPEVVILPTPVFPEID 197
P D+ +A PLP+V +LP P FP+ +
Sbjct: 75 PPDLPLLAP-PLPDVPLLPPPAFPDFE 100
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 27.5 bits (58), Expect = 8.2
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Frame = +2
Query: 221 GENNNFGQRLFGNV-LNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDG 397
G NN+ L G V +N+ G++G L RTV I G RG GR R
Sbjct: 169 GGNNSSEAPLSGRVNVNVTGLNGRLKRTV----------VIQQGGGGRGRVRGGRGGRGP 218
Query: 398 LVGVNK----SRSDGDGLVGVNKS-RSNRDGHVGVNKSRSNRDGFVGVNKSRSNGD 550
V++ G G+ G R+ G+ G + +G V KS ++ D
Sbjct: 219 APTVSRRLPIHNQQGGGMRGGRGGFRARGRGNGGRGRGGGRGNGKKPVEKSAADLD 274
>At4g08350.1 68417.m01380 KOW domain-containing transcription factor
family protein chromatin structural protein homolog
Supt5hp - Mus musculus,PID:g2754752
Length = 1029
Score = 27.5 bits (58), Expect = 8.2
Identities = 27/89 (30%), Positives = 37/89 (41%)
Frame = +2
Query: 86 EGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVL 265
E G+ GSR RG +N+ +DD+ E+ + E + D YGS G + +
Sbjct: 32 EERGRGGGGSRRKRGRSNF-IDDYAEEDSQE----EDDDDEDYGSSR----GGKGAASKR 82
Query: 266 NINGISGNLGRTVHVDDDLDEGSAISAGD 352
S L R H DD DE A D
Sbjct: 83 KKPSASIFLDREAHQVDDEDEEEEDEAED 111
>At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327
Length = 859
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 272 NGISGNLGRTVHVDDDLDEGSAISAGDS 355
NG G LG+ H++D + ++++AG+S
Sbjct: 68 NGSKGKLGKAAHLEDWITTITSLTAGES 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,388,820
Number of Sequences: 28952
Number of extensions: 248238
Number of successful extensions: 843
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -