SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b22f
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526...    33   0.14 
03_06_0587 - 34921535-34922041,34922579-34922689                       33   0.14 
01_01_1111 - 8791925-8792649,8793506-8793890,8794341-8794618,879...    31   0.58 
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757...    31   1.0  
04_01_0446 - 5815231-5816202                                           31   1.0  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    31   1.0  
03_05_0630 + 26260159-26260272,26260520-26260894                       30   1.8  
08_02_0595 + 19097299-19097462,19097490-19097910                       29   2.4  
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045...    29   2.4  
04_04_1224 + 31858110-31858338,31859180-31859301,31859398-318595...    29   3.1  
12_02_1262 + 27415191-27415279,27415367-27415565,27415635-274157...    29   4.1  
12_02_1219 + 27096477-27096590,27096704-27097078                       29   4.1  
08_01_0531 - 4604556-4604582,4604829-4604921,4605381-4605572,460...    29   4.1  
12_01_0525 - 4169605-4170417                                           28   5.4  
12_01_0242 + 1812891-1812897,1814073-1814830                           28   5.4  
07_01_0975 + 8223269-8224354                                           28   5.4  
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69...    28   5.4  
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435...    28   5.4  
12_02_0619 - 21276591-21276719,21276798-21276920,21277425-212775...    28   7.2  
04_04_0766 - 27923120-27923554,27923843-27924580,27924815-279248...    28   7.2  
04_03_0081 - 10829429-10829758                                         28   7.2  
01_07_0101 + 41086735-41086809,41088634-41088721,41089727-410899...    28   7.2  
10_08_0215 - 15939842-15940056,15940235-15940913                       27   9.5  
07_01_0595 - 4432642-4432926,4433062-4433769,4433964-4434164,443...    27   9.5  
05_03_0113 + 8526595-8527440,8527662-8528357                           27   9.5  
03_03_0236 - 15696495-15696977,15697290-15697339,15699867-15699906     27   9.5  

>04_03_0941 -
           20950190-20951088,20952436-20952478,20952580-20952606,
           20953189-20953301,20953872-20954715,20955740-20955790,
           20956026-20956126,20956205-20956244,20956360-20957124
          Length = 960

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = -3

Query: 342 DDDLDEGSAISAGDSHRGTFNNGRSNRDGLV-GVNKSRSDG-DGLVGVNKS-RSNRDGHV 172
           +DD + G   +  D +  T +  +SN D L  G NKS +D   G  G NKS   +     
Sbjct: 708 NDDNESGYKNTNTDEYGSTGSYNKSNTDDLTGGFNKSGTDDYSGGGGYNKSGADDYSSSG 767

Query: 171 GVNKS-RSNRDGFVGVNKSRSN 109
           G +KS   N  G  G NKS +N
Sbjct: 768 GYSKSGTDNYSGSGGYNKSGNN 789



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 43/164 (26%), Positives = 62/164 (37%), Gaps = 2/164 (1%)
 Frame = -3

Query: 588  YQ*AGSVEGLGKSD-SGSRDDRGTNNYGLDDFGEDRAGELHG-FRNVDFRKYGSGENNNF 415
            Y  +G     G +D SGS    G N     D+G +      G +   D  K  S ++ + 
Sbjct: 777  YSGSGGYNKSGNNDYSGSGG--GYNKSSAGDYGSEYKDSSTGDYGRGDEYKKSSSDDYDG 834

Query: 414  GQRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKS 235
            G +   +  N +G  G+ G +     D D G   S  D + G+  N  S  +   G NKS
Sbjct: 835  GYKKSSS--NDDGYGGS-GYSKPSTGDYDSGKNASNTDGYGGSGYNKSSTDNSESGYNKS 891

Query: 234  RSDGDGLVGVNKSRSNRDGHVGVNKSRSNRDGFVGVNKSRSNGD 103
             +   G  G     S  +   G NKS +   G  G       GD
Sbjct: 892  GTGEYGSGGGYNKSSTDNYESGYNKSGTGDYGSGGGYDKSDAGD 935


>03_06_0587 - 34921535-34922041,34922579-34922689
          Length = 205

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 573 SVEGLGKSDS-GSRDDR-GTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQ 409
           S +G G+ D  G RDDR G    G   +G DR G+ +  R+ D   YG G  + + +
Sbjct: 143 SGDGGGRGDRYGGRDDRYGGGGGGGGRYGSDRGGDRYSGRSRDGGGYGGGGGDRYSR 199


>01_01_1111 -
           8791925-8792649,8793506-8793890,8794341-8794618,
           8794998-8795163
          Length = 517

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 214 EPISVGPALVDTYE--PISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSE 363
           EP    P+++ T +  P +     VE APVTV   DG     I  N+  PS+
Sbjct: 178 EPYDAPPSVISTEQLNPAAEPVVGVEAAPVTVAEPDGVTTSAITANIPSPSD 229


>07_03_0551 +
           19374405-19374541,19375201-19375435,19375539-19375700,
           19375778-19375819,19375941-19376012,19376291-19376370,
           19376962-19377059,19377691-19377738,19377983-19378083,
           19378331-19378426,19378599-19378689,19379510-19379706,
           19380918-19381004,19381208-19381488,19381653-19381743
          Length = 605

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 501 RQARNCWYPYHPGSRCHSSRDPQLSQLTD 587
           R+ R C++P+ PG R  +   P++ +L D
Sbjct: 521 RRPRRCFFPFSPGVRVGAMSSPEIQKLAD 549


>04_01_0446 - 5815231-5816202
          Length = 323

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = -3

Query: 300 SHRGTFNNGRSNR-DGLVGVNKSRSDGDGLVGVNKSRSNRDG--HVGVNKSRSNRDGFVG 130
           SH+   +  R+ R  G  G  +  SDG G VG  +SRS  DG   +          G++G
Sbjct: 101 SHKRDIDGARAQRWSGGSGWGRCPSDGSGGVGWGRSRSGSDGWRRMWTEPESGGGGGWIG 160

Query: 129 VNKSR 115
               R
Sbjct: 161 TEPKR 165


>02_01_0369 +
           2649178-2655291,2655773-2656601,2656737-2657425,
           2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +1

Query: 226 VGPALVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSEIAAD 375
           VG +   + E ++ GP   EGA + VTGADG+ L   +I   +P E+  D
Sbjct: 142 VGVSEHGSLEHVNPGPGDGEGATIPVTGADGSGL---LIEGAQPVEMDVD 188


>03_05_0630 + 26260159-26260272,26260520-26260894
          Length = 162

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 288 TFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVG 169
           TF++ +S RD + G+N    DG  +  VN+++S R G  G
Sbjct: 55  TFSSEQSMRDAIEGMNGKELDGRNIT-VNEAQSRRSGGGG 93


>08_02_0595 + 19097299-19097462,19097490-19097910
          Length = 194

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -3

Query: 339 DDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGH 175
           DD  + S   A D  +G   +G     G+ GV      GDG+ GV     N+DG+
Sbjct: 93  DDAAQPSNKGAADGFQGDQGDGSQ---GVQGVGSQGIQGDGVQGVQGGGLNQDGN 144


>05_06_0005 + 24802843-24803101,24804086-24804333,24804417-24804572,
            24804956-24805114,24805862-24805929,24806044-24806433,
            24806515-24806563,24806636-24806788,24807416-24807589,
            24808207-24808362,24808705-24808756,24808830-24808988,
            24809058-24809094,24809218-24809252,24809349-24809400,
            24809614-24809663,24810590-24811924,24812688-24812825,
            24812907-24812957,24813081-24814237
          Length = 1625

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
 Frame = -3

Query: 546  SGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSG----ENNNFGQRLFG--NVLN 385
            S  ++    + YG   FG    G   G    D     SG     + + G+R     N  +
Sbjct: 1326 SNPKNGDDNSGYGRGGFGRGNRGRGRGRNFGDSGSSWSGGSYRNDESRGERSEDRWNTRD 1385

Query: 384  INGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSD 226
             +G  G  GR      D ++G+   +GD++  T+ +GR NRD     N +R+D
Sbjct: 1386 SDGGRGR-GRGHFGRGDRNQGNNYGSGDNNDRTWGSGRGNRDQDGCKNWNRND 1437


>04_04_1224 +
           31858110-31858338,31859180-31859301,31859398-31859507,
           31859661-31859725,31859940-31860004,31860387-31860632,
           31861212-31861313,31861484-31861534,31862015-31862105,
           31862777-31862841
          Length = 381

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 232 PALVDT-YEPISVGPAIVEGAPVTVTGADGTPLVQI 336
           PA + T Y P+ VGPA +  +P  VTG     +V +
Sbjct: 290 PARIGTPYHPMQVGPAYISPSPQPVTGGKFNHVVYV 325


>12_02_1262 +
           27415191-27415279,27415367-27415565,27415635-27415775,
           27415939-27416003,27416111-27416489,27416688-27417149,
           27417226-27417546,27418184-27418501
          Length = 657

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 306 GDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKS 196
           GDS  G  N G   +DG+  +  S +D D    VNKS
Sbjct: 239 GDSANGVENYGHKLKDGISSITSSETDND---DVNKS 272


>12_02_1219 + 27096477-27096590,27096704-27097078
          Length = 162

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 288 TFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVG 169
           TF++ ++ RD + G+N    DG  +  VN+++S R G  G
Sbjct: 55  TFSSEQAMRDAIEGMNGKELDGRNIT-VNEAQSRRSGGGG 93


>08_01_0531 -
           4604556-4604582,4604829-4604921,4605381-4605572,
           4605800-4606390
          Length = 300

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 33  ICDHHRRLRCRGHSRPCPWQ 92
           +  H R L CRG +RP PW+
Sbjct: 57  VARHARALLCRGCARPTPWR 76


>12_01_0525 - 4169605-4170417
          Length = 270

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/66 (25%), Positives = 25/66 (37%)
 Frame = -3

Query: 360 GRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRD 181
           G  + V ++ + G     GD   G     RSN   +         G G  GV  S  ++ 
Sbjct: 32  GERILVGENRNGGGGYGGGDRRAGREGRTRSNTLAIAASFAKLEGGGGGDGVRVSNHSKP 91

Query: 180 GHVGVN 163
             +GVN
Sbjct: 92  NAIGVN 97


>12_01_0242 + 1812891-1812897,1814073-1814830
          Length = 254

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = -3

Query: 333 LDEGSAISAGDSHRGTFNNGRS-----NRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVG 169
           L + SA++  DS  G +NN  +     NRD   GVN++R        ++  + N  GH+ 
Sbjct: 179 LADSSALA--DSSWGNWNNSNNHHSSNNRDSFNGVNRNRYQDPN--SISGRKRNSGGHIQ 234

Query: 168 VNKS--RSNRDGFVG 130
              S  R+  +G+ G
Sbjct: 235 QRNSRQRNQTEGYQG 249


>07_01_0975 + 8223269-8224354
          Length = 361

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/74 (28%), Positives = 30/74 (40%)
 Frame = -1

Query: 317 PSAPVTVTGAPSTMAGPTEMGS*VSTRAGPTEMGS*VSTRAGPTEMGT*VSTRAGPTEMG 138
           PS   + + A S   GPT  G      +GP+  G+      GP+  G       GP+  G
Sbjct: 264 PSGSPSGSPAGSPAGGPTAGGP----ASGPSSYGAASGPAEGPSSSGAASGPAEGPSPSG 319

Query: 137 S*VSTRAGPTEMGS 96
           +      GP+  GS
Sbjct: 320 A-AGPAEGPSSYGS 332


>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
            693391-693518,693951-694010,694113-694163,694704-694821,
            694990-695915,695916-697707,697810-697943,698029-698526
          Length = 1774

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
 Frame = -3

Query: 447  RKYGSGENNNFG--QRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNG 274
            RK+G   + N    +   GN  N N  +GN  R    +   D  S IS        ++  
Sbjct: 1672 RKHGFITDLNVATSEEALGNTKNWNPYAGNANRGSQRNHHRDRYSQISESWLLSSNYSRS 1731

Query: 273  RSNRDGLVGVNKSRSDGDGLVGVNKSRSN 187
            RS+  G  G ++S   G    G+ K   N
Sbjct: 1732 RSDGFGTGGSSRSTPRGQTQRGICKFHEN 1760


>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
            42543601-42543744,42543840-42544013,42544056-42544369,
            42544467-42544636,42544916-42545043,42545125-42545185,
            42545473-42545642,42545783-42547387,42547479-42547631,
            42547747-42547905,42548066-42548236,42548357-42548404,
            42548509-42548624,42548885-42549029,42549122-42549220
          Length = 1570

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = -3

Query: 309  AGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRSNRDGFVG 130
            AG S  G +N   +NR    G    +S+G    G + +R N+ G   V KS ++  G  G
Sbjct: 1368 AGSSRPGEWNRKNNNRGQGGGREVWKSEGPHRGGSSSNR-NQGGGRAVWKSEASHRG-SG 1425

Query: 129  VNKSRSNG 106
             N++R  G
Sbjct: 1426 NNRNRGGG 1433


>12_02_0619 -
           21276591-21276719,21276798-21276920,21277425-21277535,
           21277887-21277901,21279117-21279188
          Length = 149

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 238 LVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSEIAADPVDVEDIA 399
           +V T   +  G A+   +  +  GAD    V+I++ +     I  D    +DIA
Sbjct: 78  IVKTQLALPEGTAVTGESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIA 131


>04_04_0766 -
           27923120-27923554,27923843-27924580,27924815-27924874,
           27925281-27925328
          Length = 426

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 24/91 (26%), Positives = 35/91 (38%)
 Frame = +1

Query: 130 TYEPISVGPALVDTYVPISVGPALVDTYEPISVGPALVDTYEPISVGPAIVEGAPVTVTG 309
           T +PIS  PALVD  +  S              G A +  +E +  G A VE    TV G
Sbjct: 33  TTDPISEDPALVDR-IAASFWDTPPRAAFSSEAGDADIVVFEDLDHGNAAVEATTTTVPG 91

Query: 310 ADGTPLVQIIINVNRPSEIAADPVDVEDIAE 402
                    +      S+   + + ++DI E
Sbjct: 92  EPHAVAGGEVAECEPNSDNDLEQITMDDIGE 122


>04_03_0081 - 10829429-10829758
          Length = 109

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -3

Query: 393 VLNINGISGNLGRTVH-VDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDG 217
           + ++ GI  +  R V    D   + S  S  D  +G   +G     G+ GV      GDG
Sbjct: 30  IADVPGIGSSKDREVQQAPDGAAQPSDKSVADGSQGVQGDGSQ---GVQGVGSHGIQGDG 86

Query: 216 LVGVNKSRSNRDGHV 172
             G      N+DG++
Sbjct: 87  SQGFQGGNLNQDGNM 101


>01_07_0101 +
           41086735-41086809,41088634-41088721,41089727-41089923,
           41090077-41090266,41090469-41090860,41091390-41091965
          Length = 505

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 372 SGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRD-GLVGVNKSRSDGDGLVGVNKS 196
           SG  G   HV + L EG A   G   +    +G ++R    VG +KSRS G GL      
Sbjct: 12  SGGGGGACHVSNVL-EGEAKKPGADSKDARKDGSADRGVSRVGSDKSRSHG-GLDSKKDV 69

Query: 195 RSNRDGH 175
              RDG+
Sbjct: 70  VIQRDGN 76


>10_08_0215 - 15939842-15940056,15940235-15940913
          Length = 297

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = -3

Query: 444 KYGSGENNNFG-QRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRS 268
           +YGSG    +G    FG+        G  G     +    +G    AGDS RG +  G  
Sbjct: 225 RYGSGGGGGYGGPNRFGHGFGSGVGIGEAGNQYGDEYAKSKGDGGGAGDSARGGYGEGLG 284

Query: 267 NRDG 256
           +  G
Sbjct: 285 HGSG 288


>07_01_0595 -
           4432642-4432926,4433062-4433769,4433964-4434164,
           4434296-4435288
          Length = 728

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -3

Query: 315 ISAGDSHRGTFNNGR-SNRDGLVGVNKSRSDGDG----LVGVNKSRSNRDGH 175
           ++  D  RG     R + RD +V + +   DGDG    LVGV ++   R GH
Sbjct: 188 VNDNDGWRGFVKAKRLATRDTVVFMRRGGGDGDGDGELLVGVRRAPRARGGH 239


>05_03_0113 + 8526595-8527440,8527662-8528357
          Length = 513

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 11/159 (6%)
 Frame = -3

Query: 537 RDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLF---GNVLNINGISG 367
           R+ +  N++G  ++G    G    FR  +   +  G   + G RL    G+ +      G
Sbjct: 4   REGKNWNHHGNRNWGSSGGG----FREQEEEDFYHGAGRSEGGRLGFQPGSGIGAQRDFG 59

Query: 366 NLGRTV-HVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRS 190
           NL +        +    + S G + RG F  GR  R G  G       GDG  G N++  
Sbjct: 60  NLQQEYGRFRQGIRPRGSRSFG-ARRGGFG-GRPGRSGFGGGACFSQGGDGPAGTNRNNR 117

Query: 189 NRDGHVG---VNKSRSNRDG----FVGVNKSRSNGDGLV 94
              G +     + S+  R+G     VG  +S SNG G +
Sbjct: 118 GEVGGLSGKEGHNSKVTREGAGKELVGGARS-SNGSGAI 155


>03_03_0236 - 15696495-15696977,15697290-15697339,15699867-15699906
          Length = 190

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 26/93 (27%), Positives = 35/93 (37%)
 Frame = -3

Query: 378 GISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNK 199
           G S  +G  V ++ D+D+       D  R T N G S   G   +     D D +   N 
Sbjct: 90  GHSPGIGHHVAINGDVDD-------DDVRPT-NPGHSPGIGHHAIVNGADDADDVRPTNP 141

Query: 198 SRSNRDGHVGVNKSRSNRDGFVGVNKSRSNGDG 100
             S   GH  VN +  + D     N   S G G
Sbjct: 142 GHSPGIGHAVVNSADDDADDVRPTNPGHSPGIG 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,916,523
Number of Sequences: 37544
Number of extensions: 336632
Number of successful extensions: 1363
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -