Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b21r
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0027 - 195321-195932,197206-197415                               28   3.6  
02_05_0449 - 29107310-29107377,29107732-29107777,29107860-291079...    28   4.8  
01_06_1751 + 39656276-39656279,39656411-39656515,39656680-396568...    28   4.8  
02_04_0153 - 20330775-20330831,20330913-20330999,20333119-203331...    27   6.3  
11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937     27   8.4  
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33...    27   8.4  
06_03_1024 - 26958473-26958661,26958750-26958815,26959234-269593...    27   8.4  
05_01_0187 + 1349725-1352238                                           27   8.4  

>08_01_0027 - 195321-195932,197206-197415
          Length = 273

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 349 YARTDAAKSRVWNAHAAWTWFPARS-SPTTEHA 254
           Y R+D+ K  +WN      WFP++S SPTT+ +
Sbjct: 26  YRRSDSFKIGIWN------WFPSQSQSPTTQRS 52


>02_05_0449 -
           29107310-29107377,29107732-29107777,29107860-29107934,
           29108053-29108122,29108313-29108408,29108728-29108914,
           29109001-29109169,29109614-29109646,29109731-29109841,
           29110070-29111256,29112380-29112448,29114417-29114975,
           29115455-29115589,29115714-29115896
          Length = 995

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 222 IRKISNTTPPRFDPSFQ 172
           +RK SN TPPRF PS +
Sbjct: 413 LRKKSNRTPPRFRPSME 429


>01_06_1751 +
           39656276-39656279,39656411-39656515,39656680-39656801,
           39657826-39658869
          Length = 424

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 250 MWHVLWWDLTGRETR 294
           MW +L+WDL GRE +
Sbjct: 45  MWELLFWDLLGREKK 59


>02_04_0153 -
           20330775-20330831,20330913-20330999,20333119-20333157,
           20333596-20333754,20334035-20334104,20334187-20335035,
           20335270-20335562,20335640-20336347
          Length = 753

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 340 TDAAKSRVWNAHAAWTWFPARSSPTTEHAT 251
           T+A K R W A   W  FPA +    +  T
Sbjct: 69  TEAEKERAWTAMEKWFTFPAEAKDRLKRKT 98


>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
          Length = 853

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 249 YVACSVVGLDRAGNQVQAAWAFHTRDLAA 335
           +  CS+VGLD  G   QA  AF T+ + +
Sbjct: 246 HAMCSMVGLDVNGGNDQAVVAFQTKTVVS 274


>07_01_0042 -
           334417-334431,334563-334688,334852-335136,335220-335368,
           336239-336536,337030-337131,337245-337613,337973-338115,
           338334-338518,339246-339475,339734-339821,340158-340253,
           340397-340512,340604-340852,340950-341175,341411-341622
          Length = 962

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 28/125 (22%), Positives = 50/125 (40%)
 Frame = +1

Query: 4   YSLPDLQ*ISIDVRLHYILFINCFTLKI*I*YKYGLSLCITIHVVTREIRINKLFWLKTG 183
           Y LP  Q + +D+R++  LF+          Y   +   I  H+V   +    L     G
Sbjct: 82  YHLPSFQSMGVDMRMNLSLFLTI--------YFSSVLFIIAFHIVFIGLWYIGLVARMAG 133

Query: 184 IETWRGCVAYFPDCSCWHEACVMWHVLWWDLTGRETRSRLHGHSIPGIWRHLSWHSGHAW 363
             T  G    F +C+    AC +++    +L   +++S    +S P +   L    G  W
Sbjct: 134 --TRPGIWTIFQNCTVISIACCVFYSHCGNLAVHKSKS-FSRNSDPNLLAFLENEKGTTW 190

Query: 364 VAGIL 378
           ++  L
Sbjct: 191 ISNFL 195


>06_03_1024 -
           26958473-26958661,26958750-26958815,26959234-26959303,
           26959526-26959773,26959938-26960029,26960726-26960871,
           26961001-26961185,26961721-26961838,26961948-26962087
          Length = 417

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 361 KHAHYARTDAAKSRVWNAHAAWTWFPAR 278
           +HAHY  TDA     W A  ++ +  AR
Sbjct: 29  EHAHYNHTDACHHLRWTAKESYEYMYAR 56


>05_01_0187 + 1349725-1352238
          Length = 837

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 249 YVACSVVGLDRAGNQVQAAWAFHTRDLAA 335
           +  CS+VGLD  G   QA  AF T+ + +
Sbjct: 209 HAMCSMVGLDVNGGNDQAVVAFQTKTVVS 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,353,201
Number of Sequences: 37544
Number of extensions: 275602
Number of successful extensions: 709
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)