BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV10b21f (537 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 27 6.5 AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 27 6.5 AC024201-12|AAL27266.1| 544|Caenorhabditis elegans Suppressor o... 27 6.5 Z46343-7|CAE17971.2| 187|Caenorhabditis elegans Hypothetical pr... 27 8.6 >AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. Length = 1475 Score = 27.5 bits (58), Expect = 6.5 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = +1 Query: 109 NVPHKIPATQACPLCQDRCRQIPGMECPCSLDLVSRPVKSHHRTCHITHASCQQLQS 279 N IPAT + +CR + C S D S K H I++ + Q +QS Sbjct: 466 NSTWSIPATLTFAITDLKCRINSVLNCVISFDSSSSSDKQHQNYWSISNNNTQLMQS 522 >AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of pal-1 protein 3,isoform a protein. Length = 1475 Score = 27.5 bits (58), Expect = 6.5 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = +1 Query: 109 NVPHKIPATQACPLCQDRCRQIPGMECPCSLDLVSRPVKSHHRTCHITHASCQQLQS 279 N IPAT + +CR + C S D S K H I++ + Q +QS Sbjct: 466 NSTWSIPATLTFAITDLKCRINSVLNCVISFDSSSSSDKQHQNYWSISNNNTQLMQS 522 >AC024201-12|AAL27266.1| 544|Caenorhabditis elegans Suppressor of pal-1 protein 3,isoform b protein. Length = 544 Score = 27.5 bits (58), Expect = 6.5 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = +1 Query: 109 NVPHKIPATQACPLCQDRCRQIPGMECPCSLDLVSRPVKSHHRTCHITHASCQQLQS 279 N IPAT + +CR + C S D S K H I++ + Q +QS Sbjct: 466 NSTWSIPATLTFAITDLKCRINSVLNCVISFDSSSSSDKQHQNYWSISNNNTQLMQS 522 >Z46343-7|CAE17971.2| 187|Caenorhabditis elegans Hypothetical protein T23F11.6 protein. Length = 187 Score = 27.1 bits (57), Expect = 8.6 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +1 Query: 187 CPCSLDLVSRPVKSHHRTCHITHASCQ 267 CP SLD ++ P HR C +T SCQ Sbjct: 26 CPPSLDSLNLPPPVIHREC-LTRNSCQ 51 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,710,855 Number of Sequences: 27780 Number of extensions: 249393 Number of successful extensions: 608 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 562 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 607 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1070714938 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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