Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b18r
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 37 0.004
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 35 0.014
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.2
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 27 2.2
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 26 5.1
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 26 5.1
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 5.1
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.1
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 26 6.7
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 26 6.7
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 26 6.7
SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24 ... 25 8.9
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le... 25 8.9
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 36.7 bits (81), Expect = 0.004
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 351 PMRLKQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPN-SNTLFDYVHKDDLPKDLG 175
P R+ + +VIN P ++L K L +KIH N + L + + D+LP LG
Sbjct: 201 PERMGKFYVINAPWGFSSAFNLIKGFLDEATVKKIHILGSNYKSALLEQIPADNLPAKLG 260
Query: 174 G 172
G
Sbjct: 261 G 261
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 34.7 bits (76), Expect = 0.014
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = -3
Query: 345 RLKQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKDLGGIR 166
RL + VIN P V + L P + +EK+ F+ P L YV KD L + GG
Sbjct: 769 RLGRALVINIPWAVWGFFKLISPFIDPITREKLKFNEP----LDRYVPKDQLDSNFGGSL 824
Query: 165 DSLDIYTKKMKEMM-LTKRDVLARDDLWRKNTAK 67
+ K +++ L K L + WRK +K
Sbjct: 825 HFEYHHEKYWPQLVELCKSRRLGILEKWRKMGSK 858
>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/80 (21%), Positives = 35/80 (43%)
Frame = -3
Query: 336 QIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKDLGGIRDSL 157
Q+ V++ +I +Y +K + V ++ + N +FD + DDL L + L
Sbjct: 22 QVSVVDVTMINISLYKSYKSYPTNKVLSELAALFESCNLIFDLIWFDDLQNILNQVTYEL 81
Query: 156 DIYTKKMKEMMLTKRDVLAR 97
D K ++ + V ++
Sbjct: 82 DDKIKSKLQVAHEREAVFSK 101
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 27.5 bits (58), Expect = 2.2
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +1
Query: 361 PLVFRYCFAENR---IILSNEFIVKILNV----YNNNVVVSQTIG*EPSVCGQQEQSRIM 519
P FRY F+ N L +F K + + YN++++V+ +G ++ + ++ R +
Sbjct: 308 PEDFRYLFSGNTDDMFRLGVKFTRKTVKLFSQFYNSDIIVASPLGLRLAIGNKGDKKRDL 367
Query: 520 *SFKSIESRVVDLPNPYMFFIRRFINCHFHNLH 618
SIE +VD + + I C F L+
Sbjct: 368 DYLSSIEIAMVDQAHALVMQNWEHIECIFDELN 400
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/56 (21%), Positives = 26/56 (46%)
Frame = -3
Query: 669 PELFTNRDPLSPSIQETMKIVKMAVYETTDKKHIWIWQVNDPGFDRFETLHDSRLF 502
P +F + P + +++VK+ + ET K +++ + G + D RL+
Sbjct: 392 PAIFQDVKIPEPVVGNALEVVKLLLKETGGKAFVFVSALPTMGLGKLRHREDQRLY 447
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -2
Query: 319 YTADSRQNIFVVQAPPQKRRKRKDTFSHAKF-EHTIRLRTQRRLTKGLGRDQRQSGYLYK 143
+ DS Q +++ K +++ ++ K T+R +TQ L K G + ++GYLY+
Sbjct: 68 FERDSTQRTLQIESLESKIGEQERDLNNEKLASETLREKTQL-LEKENGALKVENGYLYE 126
Query: 142 KNER 131
K+ +
Sbjct: 127 KSRK 130
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 322 KYTADSRQNIFVVQAPPQKRRK--RKDTFSHAKFEHTIRLRTQRRL 191
+Y S QN+ + +P +K+RK +D FS + E + T +
Sbjct: 29 EYEGPSLQNVSICASPSEKKRKWGTQDEFSLTENEENNEIETNEEM 74
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 562 NPYMFFIRRFINCHFHNLHSFLYR 633
+P+ F I+R H + LHSF+YR
Sbjct: 78 SPHFFPIKRIRPFHENPLHSFVYR 101
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 6.7
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -3
Query: 186 KDLGGIRDSLD--IYTKKMKEMMLTKRDVLARDDLWRKNTAKPEADNAKSFRNLGID*LF 13
K L I + D + E++ K DVL + L RK++ PEAD NL + +F
Sbjct: 21 KTLSSIENPFDDPYILSEESEILTIKTDVLRPNILNRKSSFYPEADAPVRKSNLQVKKIF 80
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 232 WRVKMYLFFYVAFEEGLEQRIY 297
W V +LF V FEEGLEQ Y
Sbjct: 264 WYVVSFLFSLV-FEEGLEQSAY 284
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -2
Query: 379 NIEIPRGGNADAFEADTRHKYTADSRQNIFVVQAPP 272
++E PRG N +AFE + +++ + ++F + +PP
Sbjct: 82 SVEKPRGRNMNAFEETSWNRFRKNG--SLFPLSSPP 115
>SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 175
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -2
Query: 265 RRKRKDTFSHAKFEHTIRLRTQRRLTKGLGR 173
+RKRK + KF+ RLR QR L K LG+
Sbjct: 147 KRKRKLKMNKHKFKK--RLRRQRALRKRLGK 175
>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
Leu1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 126 MLTKRDVLARDDLWRKNTAK 67
+L K +VLA LWRK AK
Sbjct: 188 LLDKANVLATSRLWRKTVAK 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,552
Number of Sequences: 5004
Number of extensions: 60907
Number of successful extensions: 172
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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