Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b18r
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023)         33   0.25 
SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023)          33   0.25 
SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014)                   31   0.77 
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    30   1.8  
SB_26865| Best HMM Match : efhand (HMM E-Value=7.5e-08)                30   1.8  
SB_27766| Best HMM Match : Exo_endo_phos (HMM E-Value=0.26)            29   4.1  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              29   4.1  
SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016)             28   7.2  
SB_50580| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1)                 28   9.5  
SB_14792| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023)
          Length = 186

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -2

Query: 295 IFVVQAPPQKRR--KRKDTFSHAKFEHTIRLRTQRRLTKGLGRDQRQSGYLYKKNERNDA 122
           + VV  P +KR   KRK +    K + ++R  + ++LTK      R+S    K+N R   
Sbjct: 90  VVVVAKPARKRSAAKRKGSKRGRKGKRSVRKSSVKKLTKKSKSKSRKSKASKKRNARRRP 149

Query: 121 NETRRPSSR*PMEK 80
              R+  SR P  +
Sbjct: 150 RSARKTKSRAPARR 163


>SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023)
          Length = 186

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -2

Query: 295 IFVVQAPPQKRR--KRKDTFSHAKFEHTIRLRTQRRLTKGLGRDQRQSGYLYKKNERNDA 122
           + VV  P +KR   KRK +    K + ++R  + ++LTK      R+S    K+N R   
Sbjct: 90  VVVVAKPARKRSAAKRKGSKRGRKGKRSVRKSSVKKLTKKSKSKSRKSKASKKRNARRRP 149

Query: 121 NETRRPSSR*PMEK 80
              R+  SR P  +
Sbjct: 150 RSARKTKSRAPARR 163


>SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014)
          Length = 351

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = -3

Query: 360 GAMPMRLKQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKD 181
           G+   ++KQ     T L+ D      +P  K  VKEK       +  +FD   K+D PKD
Sbjct: 99  GSKKRKVKQSSKKKTLLVNDSSSDEDEPPPKPLVKEKSKKPRAKNKEVFDLWGKEDTPKD 158

Query: 180 LGGIRDSLDIYTK-KMKEMMLTKRDV 106
           +      L +  K K+KE++L   ++
Sbjct: 159 VN--EHYLKVTGKMKVKELLLNANEI 182


>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 303  DKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDD 193
            D+ Y LF  L+    KE+ HF   +S T+FD + +DD
Sbjct: 1443 DEFYLLFCILIAVKDKEEKHFIHRHSRTVFDLLDEDD 1479


>SB_26865| Best HMM Match : efhand (HMM E-Value=7.5e-08)
          Length = 151

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 303 DKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDD 193
           D+ Y LF  L+    KE+ HF   +S T+FD + +DD
Sbjct: 60  DEFYLLFCILIAVKDKEEKHFIHRHSRTVFDLLDEDD 96


>SB_27766| Best HMM Match : Exo_endo_phos (HMM E-Value=0.26)
          Length = 348

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 267 SDVKEKIHFHTPNSNTLFDYVHKDDLPKDLGGIRDS 160
           S++ E I+ HTPN N L  Y+  D  P D   I ++
Sbjct: 80  SNLNEGINLHTPNQNLL--YIQCDTQPSDKNNIGET 113


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -3

Query: 270  KSDVKEKIHFHTPNSNTLFDYVHKDDLPKDLGGIRDSLDIYTKKMKEMMLTKRDV-LARD 94
            ++ + EKI       NTL D   K+ + +DL  ++  +D Y ++++    T  D+ L RD
Sbjct: 1438 RNSLDEKIEELRRQVNTLRD--EKNIVERDLNELKSKIDYYNQEIESRDKTIEDLKLKRD 1495

Query: 93   DLWRKNTA 70
            +L R+  A
Sbjct: 1496 ELERQMDA 1503


>SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016)
          Length = 583

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 305 STKYIRCSSPSSKAT*KKRYIFTRQIRTHYSITYTKTTYQRTWEGSETVWI 153
           S KY R    +   +   R  F ++IR   + TYT    +RT E S  +W+
Sbjct: 525 SGKYARLRVSAKNMSFTCRRYFCKRIRCSRAYTYTYVAVERTLEASR-IWV 574


>SB_50580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 358 GNADAFEADTRHKYTADSRQNIFVVQAPPQKRRKRKDTFSHAKF 227
           G  DAF A  +H  ++  RQN  +       ++K+KD     K+
Sbjct: 112 GTKDAFPAALKHNKSSRKRQNKHIPFPQKTNKKKKKDPLKTFKY 155


>SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1)
          Length = 429

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 342 LKQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDL 190
           LK  ++++  +    +   F     S VKEK+HF       L+D+++ D L
Sbjct: 342 LKAFYIVHPTVWARIVTWFFTTFTASSVKEKVHF-LSGVQYLYDWINPDQL 391


>SB_14792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -3

Query: 357 AMPMRLKQIHVINTPLIVDKIYSL 286
           AM + L+ +H++N+P +++ IYS+
Sbjct: 105 AMALILQYVHILNSPPVINVIYSV 128


>SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 342 LKQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDL 190
           LK  ++++  +    +   F     S VKEK+HF       L+D+++ D L
Sbjct: 52  LKAFYIVHPTVWARIVTWFFTTFTASSVKEKVHF-LSGVQYLYDWINPDQL 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,504,669
Number of Sequences: 59808
Number of extensions: 423837
Number of successful extensions: 1148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)