Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b18r
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81507-2|CAB04135.1|  388|Caenorhabditis elegans Hypothetical pr...    39   0.004
U58734-6|AAB52505.3|  383|Caenorhabditis elegans Hypothetical pr...    39   0.004
AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical ...    33   0.29 
AF039048-7|AAB94234.2|  688|Caenorhabditis elegans Hypothetical ...    32   0.51 
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    31   0.67 
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    31   0.67 
Z81493-7|CAE46664.1|  342|Caenorhabditis elegans Hypothetical pr...    31   0.89 
Z81493-6|CAB04038.1|  335|Caenorhabditis elegans Hypothetical pr...    31   0.89 
Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z46828-5|CAA86861.3|  596|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z70205-5|CAH60748.1|  421|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z66521-13|CAA91403.1|  444|Caenorhabditis elegans Hypothetical p...    28   8.3  
U97000-10|AAC47997.1|  530|Caenorhabditis elegans Hypothetical p...    28   8.3  

>Z81507-2|CAB04135.1|  388|Caenorhabditis elegans Hypothetical
           protein F18A11.2 protein.
          Length = 388

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 351 PMRLKQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHT-PNSNTLFDYVHKDDLPKDLG 175
           P  L++I ++N P  V+ ++    P L  D KEKI   + P    +  +  K  LP DLG
Sbjct: 181 PQLLQKIIIVNAPSFVNVLHQACSPFLPEDYKEKIVITSEPAIGAIQKHADKCFLPSDLG 240

Query: 174 G 172
           G
Sbjct: 241 G 241


>U58734-6|AAB52505.3|  383|Caenorhabditis elegans Hypothetical
           protein T27A10.7 protein.
          Length = 383

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 15/59 (25%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = -3

Query: 339 KQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPN-SNTLFDYVHKDDLPKDLGGIR 166
           ++I++IN P ++  +Y++  P+L S  +EK+ F   +  N L + + ++++    GG++
Sbjct: 201 RRIYIINCPAMMSAVYAMVSPVLSSQTREKVRFLDKDWKNHLIEEIGEENIFMHWGGVK 259


>AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical
           protein H41C03.1 protein.
          Length = 396

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = -3

Query: 357 AMPMRLKQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPNSN---TLFDYVHKDDLP 187
           A P  +  + +IN P  +  ++    PLL    + K+   + NS+   ++  + H D++P
Sbjct: 175 AYPEWINTLFLINAPSFMTLLWKAIGPLLPERTRNKVRICSGNSDWKTSVQKHAHIDNIP 234

Query: 186 KDLGG 172
           K  GG
Sbjct: 235 KHWGG 239


>AF039048-7|AAB94234.2|  688|Caenorhabditis elegans Hypothetical
           protein F16B4.3 protein.
          Length = 688

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = -3

Query: 249 IHFHTPNSNTLFDYVHKDDLPKDLGGIRDSLDIYTKKMKEMMLTKRDVLARDDLWRKNTA 70
           +++H  N N +   + K+++ K L    D +  Y  K K +M+   ++++    W +N+ 
Sbjct: 527 VYYHQMNGNQIRSLLKKENIEKVLNKTFDVMTPYLSKRKLVMIDLGEIMS----WSRNSI 582

Query: 69  KPEAD 55
             EAD
Sbjct: 583 LSEAD 587


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = -2

Query: 355 NADAFEADTRHKYTADSRQNIFVVQAPPQKRRKRKDTFSHAKFE-HTIRLRTQRRLTKGL 179
           ++D+ ++D     ++DS  +      PP+K++K+    S  K E   I  R +       
Sbjct: 709 SSDSSDSDDSSDSSSDSSSSSESEPEPPKKKKKKNSEESSKKKEKENIGRRDRGDKRAER 768

Query: 178 GRDQRQSGYLYKKNERNDANETRRP 104
            RDQ        +  R D++E RRP
Sbjct: 769 HRDQSVENKDKDRRRRQDSDENRRP 793


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = -2

Query: 355 NADAFEADTRHKYTADSRQNIFVVQAPPQKRRKRKDTFSHAKFE-HTIRLRTQRRLTKGL 179
           ++D+ ++D     ++DS  +      PP+K++K+    S  K E   I  R +       
Sbjct: 709 SSDSSDSDDSSDSSSDSSSSSESEPEPPKKKKKKNSEESSKKKEKENIGRRDRGDKRAER 768

Query: 178 GRDQRQSGYLYKKNERNDANETRRP 104
            RDQ        +  R D++E RRP
Sbjct: 769 HRDQSVENKDKDRRRRQDSDENRRP 793


>Z81493-7|CAE46664.1|  342|Caenorhabditis elegans Hypothetical
           protein F01D5.7b protein.
          Length = 342

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 279 PLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKDLGGIRDSLD 154
           P + S++  K+ FH P+    +    K D  KDL  +RD  D
Sbjct: 33  PPIPSEIIRKLAFHPPDKGATYRIELKSDPEKDLESVRDCHD 74


>Z81493-6|CAB04038.1|  335|Caenorhabditis elegans Hypothetical
           protein F01D5.7a protein.
          Length = 335

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 279 PLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKDLGGIRDSLD 154
           P + S++  K+ FH P+    +    K D  KDL  +RD  D
Sbjct: 33  PPIPSEIIRKLAFHPPDKGATYRIELKSDPEKDLESVRDCHD 74


>Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical
           protein T03F7.7b protein.
          Length = 394

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
 Frame = -3

Query: 342 LKQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKDLGG-IR 166
           L ++ +IN P I+  ++ + K L+  +  EK+ F   N   L  Y+  + +P + GG  R
Sbjct: 197 LCKLLLINPPGIISVMWQVTKRLVDPNTVEKLAF-LSNVEDLKKYLEPEAIPVEYGGTYR 255

Query: 165 DS---LDIYTKKMKE-MMLTKRDVLARDDLWRKN 76
           D     D      K+   +TK D   ++ +W KN
Sbjct: 256 DDTGYADPPEGACKQPKRITKEDYKPQEYIWVKN 289


>Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical
           protein T03F7.7a protein.
          Length = 368

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
 Frame = -3

Query: 342 LKQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPNSNTLFDYVHKDDLPKDLGG-IR 166
           L ++ +IN P I+  ++ + K L+  +  EK+ F   N   L  Y+  + +P + GG  R
Sbjct: 197 LCKLLLINPPGIISVMWQVTKRLVDPNTVEKLAF-LSNVEDLKKYLEPEAIPVEYGGTYR 255

Query: 165 DS---LDIYTKKMKE-MMLTKRDVLARDDLWRKN 76
           D     D      K+   +TK D   ++ +W KN
Sbjct: 256 DDTGYADPPEGACKQPKRITKEDYKPQEYIWVKN 289


>Z46828-5|CAA86861.3|  596|Caenorhabditis elegans Hypothetical
           protein R03D7.8 protein.
          Length = 596

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = -3

Query: 402 YNSILGKTISKYQGGAMPM-RLK-QIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPN 229
           + +I+GK++     G  PM R K  IH +  P+  + + ++ + ++ +    ++  + PN
Sbjct: 459 FAAIIGKSVLAVYSGFSPMIREKGHIHHLFRPVTAEHMNAVERHIIFNQPSNRVRMYRPN 518

Query: 228 SNTLFDYVHK 199
            NT  D+  K
Sbjct: 519 PNTEGDWFGK 528


>Z70205-5|CAH60748.1|  421|Caenorhabditis elegans Hypothetical
           protein C11H1.9a protein.
          Length = 421

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 351 PMRLKQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHFHTPNS-NTLFDYVHKDDLPKDLG 175
           P  +  + ++N    +   Y + K ++ +   EK   H  +   TL + ++ DD+P  LG
Sbjct: 199 PELVTPVDMVNIAKWIHVPYKIAKAMMPTGFSEKFRLHDRHFIETLTEDINIDDIPVSLG 258

Query: 174 G 172
           G
Sbjct: 259 G 259


>Z66521-13|CAA91403.1|  444|Caenorhabditis elegans Hypothetical
           protein W02B12.8a protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 342 LKQIHVINTPLIVDKIYSLFKPLLKSDVKEKIHF 241
           LK ++V++    +  I+SLFK  + S  + K H+
Sbjct: 165 LKALYVVHPTRFIRIIFSLFKGFISSKFENKFHY 198


>U97000-10|AAC47997.1|  530|Caenorhabditis elegans Hypothetical
           protein F21F8.11 protein.
          Length = 530

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 396 SILGKTISKYQGGAMPMRLKQIHVINTPLIVDKIYSLFKPLLKSDVKEK 250
           + LG  I  Y  G +  R    H+++  +++  I SL  P+L   + EK
Sbjct: 129 AFLGGFIFSYPAGVLVDRFSARHILSVAILMLTIASLLMPVLSIYIGEK 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,176,929
Number of Sequences: 27780
Number of extensions: 332867
Number of successful extensions: 950
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)