Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b18r
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.4  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   5.4  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   7.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   7.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 222 TLFDYVHKDDLP 187
           +LFD+ H +DLP
Sbjct: 342 SLFDFYHPEDLP 353


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 222 TLFDYVHKDDLP 187
           +LFD+ H +DLP
Sbjct: 48  SLFDFYHPEDLP 59


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +1

Query: 388 ENRII--LSNEFIVKILNVYNNN 450
           E +II  LSN +I  I N  NNN
Sbjct: 78  ERKIISSLSNNYISNISNYNNNN 100


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +1

Query: 388 ENRII--LSNEFIVKILNVYNNN 450
           E +II  LSN +I  I N  NNN
Sbjct: 316 ERKIISSLSNNYISNISNYNNNN 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,940
Number of Sequences: 438
Number of extensions: 4420
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)