Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b17f
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 207 5e-54
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35) 34 0.11
SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33) 29 3.1
SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41) 28 5.4
SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8) 28 5.4
SB_58892| Best HMM Match : IncA (HMM E-Value=1.3) 28 7.2
SB_32771| Best HMM Match : IncA (HMM E-Value=1.4) 28 7.2
SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7) 27 9.5
SB_6638| Best HMM Match : CaMBD (HMM E-Value=5.1) 27 9.5
>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
Length = 600
Score = 207 bits (506), Expect = 5e-54
Identities = 102/192 (53%), Positives = 132/192 (68%), Gaps = 2/192 (1%)
Frame = +1
Query: 52 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 231
K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+ R LRPIVRCPT
Sbjct: 4 KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63
Query: 232 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 411
+Y+TKVRAGRGFTL E++AAG+ A TIGIAVD RR+N+S ESLQ NVQR+KEY+++
Sbjct: 64 FKYNTKVRAGRGFTLDELKAAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSK 123
Query: 412 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLR 588
LI+FP K K +G++ + A QL+GP+MP+ Q + ARPITEDEK + +
Sbjct: 124 LIVFPRKANKPKQGDSEAADLANAVQLQGPVMPIPQESVPIKARPITEDEKKSASSRQCE 183
Query: 589 GARSI-AKLVGI 621
+ + KLVG+
Sbjct: 184 SSGEVKTKLVGL 195
>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
Length = 440
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 328 IAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQ 486
IA+ R + + + RI+E R ++F GK V G +EE+ KLA +
Sbjct: 301 IALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353
>SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33)
Length = 665
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = +1
Query: 337 DPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQ 516
+P + ++ E+ + N ++ +E A + K KKVL E+ ++LR
Sbjct: 462 EPAWKREAREAREANYKKPEEKVAPSVQHLKDKKVLPVLRPEDILSGKSELRKSWREPDV 521
Query: 517 PAPKSVARPITEDE 558
PAPK P EDE
Sbjct: 522 PAPKKPVPPPPEDE 535
>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 177 GLSFLYSILLSAVSSSWLVKPSFNKSLPILVEMSIRYHIIPLAHFDVGVLPRQRK 13
G F +IL+ A SS L++P F+ SLP+ + + L H P +RK
Sbjct: 195 GFDFGKAILVKASLSSDLIRPGFDVSLPLFPKTHPHKDLGNLPH-SCSAFPLERK 248
>SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)
Length = 430
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 219
+GS V ++T NP L++R N +P R +L+W++ G +
Sbjct: 375 KGSWVALTVESSTLANPNILLARIQNLMPGRKASLLWFKATGKK 418
>SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)
Length = 91
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +1
Query: 313 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLAT 483
AR I +A+ RR + S+Q + EY R KG+KV KG +ERK A+
Sbjct: 17 ARRIRLAIFSRRLKFARTSVQNRQRNQAEYSER-----KGRKVRKGRKVRKERKPAS 68
>SB_58892| Best HMM Match : IncA (HMM E-Value=1.3)
Length = 449
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 198
+GS V +T NP L++R N +P R +L+W++ + + + P
Sbjct: 176 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 226
>SB_32771| Best HMM Match : IncA (HMM E-Value=1.4)
Length = 318
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 198
+GS V +T NP L++R N +P R +L+W++ + + + P
Sbjct: 66 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 116
>SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7)
Length = 154
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 219
+GS A V +T NP L++R N +P R +L+W++ +
Sbjct: 60 KGSWAALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEK 103
>SB_6638| Best HMM Match : CaMBD (HMM E-Value=5.1)
Length = 165
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 219
+GS V ++T NP L++R N +P R L+W++ G +
Sbjct: 110 KGSWVALTVESSTLANPNILLARIQNLMPGRKALLLWFKATGKK 153
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,219,725
Number of Sequences: 59808
Number of extensions: 382589
Number of successful extensions: 1114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -