Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b15r
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.7  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   5.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = -2

Query: 613 LYHC**VVNLIYFINLLLCFSKDI*LMFCSNFIDVLKIFSKVLDAFFIHF 464
           ++ C  +  + YF  + + F+  +  + CS +  V  +F      F +HF
Sbjct: 47  VFKCYNLRRIYYFYCVSITFNVHLLFLLCSGYFTVHLLFYCPFIIFTVHF 96



 Score = 22.2 bits (45), Expect = 4.0
 Identities = 5/14 (35%), Positives = 12/14 (85%)
 Frame = +2

Query: 635 ILCLLYYLIKIFFI 676
           +LC+ Y+++ +FF+
Sbjct: 130 LLCIYYFVVPLFFL 143


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 294 VNILHAFSSFVCLYQLSNIKLVLESS 371
           VNI+H F      Y+ SNI LV+ ++
Sbjct: 90  VNIVHVFRKRRVNYKDSNIGLVVANA 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,443
Number of Sequences: 336
Number of extensions: 3281
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)