Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b15r
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical...    28   5.3  
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical
           protein Y102A5C.28 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 234 LQETKYRKVLFYFTIQNNK**SQSLWCVCSFVFRYPNLFIIIKSGIFC 91
           + E  Y   LFY TI N+   S  L  V  +V    +LF++I  G+ C
Sbjct: 173 VDEVAYTGRLFYSTIDNSLRYSAILTGVLQWVLTASSLFLVIFFGLRC 220


>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
           protein ZK455.2 protein.
          Length = 1118

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 465 KCMKNASRTFENIFNTSIKLEQNISQISLLK 557
           +C KN  R FEN   +S KL  N+  ++L K
Sbjct: 68  RCSKNVRRRFENEKYSSTKLYFNVRSLNLKK 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,986,887
Number of Sequences: 27780
Number of extensions: 282795
Number of successful extensions: 567
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)