Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b15r
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21530.1 68417.m03111 transducin family protein / WD-40 repea...    29   2.1  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    29   3.7  
At4g26720.1 68417.m03851 serine/threonine protein phosphatase PP...    28   6.5  

>At4g21530.1 68417.m03111 transducin family protein / WD-40 repeat
           family protein contains 1 WD-40 repeat (PF00400);
           similar to anaphase-promoting complex subunit 4
           GI:6180011 [Homo sapiens]; supported by EST GB:AU237382
          Length = 510

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 237 KFCAILGNFRFLSWILKFKVNILHAFSSFVCLYQLSNIKLVLES 368
           +F ++LG  R    + +F VN L    SF CL     +K VL+S
Sbjct: 329 EFLSLLGGARISPALNQFLVNSLGEVVSFTCLIFFRGVKRVLKS 372


>At2g45540.1 68415.m05663 WD-40 repeat family protein /
           beige-related contains Pfam PF02138: Beige/BEACH domain;
           contains Pfam PF00400: WD domain, G-beta repeat (3
           copies)
          Length = 2946

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 385 YWN-SQEDSKTSFMFDS*YRQTNELNA 308
           YW  S++DS+T+F  D   RQ  ELNA
Sbjct: 847 YWMISEKDSETTFPLDGNTRQMGELNA 873


>At4g26720.1 68417.m03851 serine/threonine protein phosphatase PP-X
           isozyme 1 (PPX1) identical to SP|P48529 Serine/threonine
           protein phosphatase PP-X isozyme 1 (EC 3.1.3.16)
           {Arabidopsis thaliana}; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 305

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 171 SQSLWCVCSFVFRYPNLFIIIKSGIFC 91
           S ++W  C+ +F Y +L  ++++ IFC
Sbjct: 133 SSNVWRYCTDIFDYMSLSAVVENKIFC 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,473,520
Number of Sequences: 28952
Number of extensions: 232999
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)