BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV10b15f (657 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4 SB_3394| Best HMM Match : DUF1203 (HMM E-Value=2.7) 29 2.5 SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64) 29 4.4 SB_42201| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4 SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013) 29 4.4 SB_48616| Best HMM Match : RVT_1 (HMM E-Value=2.8e-26) 28 5.8 >SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3259 Score = 30.3 bits (65), Expect = 1.4 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Frame = +1 Query: 49 EKADLNDAKTCNLLAKG-ILELYEPPLTTINTHLKELTEKQDAIHNTIKFERQKLEDIQN 225 EK +L++ LL K L E L L E EKQ + + +LED+Q+ Sbjct: 2424 EKLELSEQNLNQLLRKAEALPKIEEELAVRMAALNEAAEKQGTAEEQVTKLKTQLEDLQS 2483 Query: 226 XXXXX--------XXXXXIATNREKLLTISNSMMVLH--KRVQSLQVRAANVEKAANTRA 375 ++T +KLLT SN + H +R+ +L+ + A ++ + + Sbjct: 2484 ELKRAREREKMNEDHNTRLSTTIDKLLTESNERLQAHLKERMNALEEKTAVTQELESMKL 2543 Query: 376 AI 381 + Sbjct: 2544 QV 2545 >SB_3394| Best HMM Match : DUF1203 (HMM E-Value=2.7) Length = 365 Score = 29.5 bits (63), Expect = 2.5 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Frame = +3 Query: 84 LTGQRYFGVVRTTIDNNKHS-FEGINGKARCYTQHNKI*EAKARRYTE*CNAGCNVSRYC 260 LT QR GV+ T + +N+ FEG + + H K + C++ + Sbjct: 118 LTPQRIMGVIETVVQSNQQFVFEG-DFRLHVIRTHLPSGAGKNKLKNSCTLNTCDLDAW- 175 Query: 261 NKQRKTINHIEFNDGTT*KSAIVTG 335 K +K+I IE +DG +IVTG Sbjct: 176 RKGKKSIIRIENSDGLCAARSIVTG 200 >SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64) Length = 520 Score = 28.7 bits (61), Expect = 4.4 Identities = 16/64 (25%), Positives = 28/64 (43%) Frame = +1 Query: 151 ELTEKQDAIHNTIKFERQKLEDIQNXXXXXXXXXXIATNREKLLTISNSMMVLHKRVQSL 330 +LTE Q+ + N + + E+ N ATN+ L + ++LH+R+ Sbjct: 74 KLTELQEEVGNDLLTDSGLSEEEANQIVAKLMANVAATNKRLLEEANRQSLILHERLAKR 133 Query: 331 QVRA 342 Q A Sbjct: 134 QAMA 137 >SB_42201| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 542 Score = 28.7 bits (61), Expect = 4.4 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +1 Query: 13 NPTIDRNTMENTEKADLNDAKTCNLLAKGILEL 111 NP I R E+T+K DL K + L KGI+ L Sbjct: 171 NPGIWRKLREHTQKRDLQFYKLQHALVKGIMPL 203 >SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013) Length = 310 Score = 28.7 bits (61), Expect = 4.4 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -3 Query: 331 VTIALFYVVPSLNSIWLIVFLCLLQYRLTLHPALHH 224 V + + VV N+ +++ CL+ Y TLHP HH Sbjct: 186 VVVVVVVVVVVTNNFIVLIRFCLVTYS-TLHPLSHH 220 >SB_48616| Best HMM Match : RVT_1 (HMM E-Value=2.8e-26) Length = 327 Score = 28.3 bits (60), Expect = 5.8 Identities = 17/65 (26%), Positives = 28/65 (43%) Frame = +1 Query: 31 NTMENTEKADLNDAKTCNLLAKGILELYEPPLTTINTHLKELTEKQDAIHNTIKFERQKL 210 NT+ N +LN LL L + +T + +L +L+E D T+ E+ K+ Sbjct: 140 NTVRNCNDVELNSRPISCLLYADDLVIVSKTVTGLQKYLDKLSEFCDEAKLTVNLEKTKI 199 Query: 211 EDIQN 225 N Sbjct: 200 MIFNN 204 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,986,052 Number of Sequences: 59808 Number of extensions: 402911 Number of successful extensions: 845 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 759 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 844 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1681430875 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -