Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b15f
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_3394| Best HMM Match : DUF1203 (HMM E-Value=2.7)                    29   2.5  
SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64)            29   4.4  
SB_42201| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)            29   4.4  
SB_48616| Best HMM Match : RVT_1 (HMM E-Value=2.8e-26)                 28   5.8  

>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 11/122 (9%)
 Frame = +1

Query: 49   EKADLNDAKTCNLLAKG-ILELYEPPLTTINTHLKELTEKQDAIHNTIKFERQKLEDIQN 225
            EK +L++     LL K   L   E  L      L E  EKQ      +   + +LED+Q+
Sbjct: 2424 EKLELSEQNLNQLLRKAEALPKIEEELAVRMAALNEAAEKQGTAEEQVTKLKTQLEDLQS 2483

Query: 226  XXXXX--------XXXXXIATNREKLLTISNSMMVLH--KRVQSLQVRAANVEKAANTRA 375
                              ++T  +KLLT SN  +  H  +R+ +L+ + A  ++  + + 
Sbjct: 2484 ELKRAREREKMNEDHNTRLSTTIDKLLTESNERLQAHLKERMNALEEKTAVTQELESMKL 2543

Query: 376  AI 381
             +
Sbjct: 2544 QV 2545


>SB_3394| Best HMM Match : DUF1203 (HMM E-Value=2.7)
          Length = 365

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +3

Query: 84  LTGQRYFGVVRTTIDNNKHS-FEGINGKARCYTQHNKI*EAKARRYTE*CNAGCNVSRYC 260
           LT QR  GV+ T + +N+   FEG + +      H      K +         C++  + 
Sbjct: 118 LTPQRIMGVIETVVQSNQQFVFEG-DFRLHVIRTHLPSGAGKNKLKNSCTLNTCDLDAW- 175

Query: 261 NKQRKTINHIEFNDGTT*KSAIVTG 335
            K +K+I  IE +DG     +IVTG
Sbjct: 176 RKGKKSIIRIENSDGLCAARSIVTG 200


>SB_53736| Best HMM Match : Borrelia_orfA (HMM E-Value=0.64)
          Length = 520

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +1

Query: 151 ELTEKQDAIHNTIKFERQKLEDIQNXXXXXXXXXXIATNREKLLTISNSMMVLHKRVQSL 330
           +LTE Q+ + N +  +    E+  N           ATN+  L   +   ++LH+R+   
Sbjct: 74  KLTELQEEVGNDLLTDSGLSEEEANQIVAKLMANVAATNKRLLEEANRQSLILHERLAKR 133

Query: 331 QVRA 342
           Q  A
Sbjct: 134 QAMA 137


>SB_42201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 13  NPTIDRNTMENTEKADLNDAKTCNLLAKGILEL 111
           NP I R   E+T+K DL   K  + L KGI+ L
Sbjct: 171 NPGIWRKLREHTQKRDLQFYKLQHALVKGIMPL 203


>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
          Length = 310

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 331 VTIALFYVVPSLNSIWLIVFLCLLQYRLTLHPALHH 224
           V + +  VV   N+  +++  CL+ Y  TLHP  HH
Sbjct: 186 VVVVVVVVVVVTNNFIVLIRFCLVTYS-TLHPLSHH 220


>SB_48616| Best HMM Match : RVT_1 (HMM E-Value=2.8e-26)
          Length = 327

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 31  NTMENTEKADLNDAKTCNLLAKGILELYEPPLTTINTHLKELTEKQDAIHNTIKFERQKL 210
           NT+ N    +LN      LL    L +    +T +  +L +L+E  D    T+  E+ K+
Sbjct: 140 NTVRNCNDVELNSRPISCLLYADDLVIVSKTVTGLQKYLDKLSEFCDEAKLTVNLEKTKI 199

Query: 211 EDIQN 225
               N
Sbjct: 200 MIFNN 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,986,052
Number of Sequences: 59808
Number of extensions: 402911
Number of successful extensions: 845
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)