Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b15f
(657 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC004819-1|AAH04819.1| 172|Homo sapiens pallidin homolog (mouse... 45 3e-04
AF080470-1|AAF08343.1| 172|Homo sapiens pallid protein. 45 3e-04
BC001666-1|AAH01666.1| 941|Homo sapiens PRP6 pre-mRNA processin... 36 0.17
AL356790-1|CAH71582.1| 941|Homo sapiens PRP6 pre-mRNA processin... 36 0.17
AL355803-2|CAC16610.2| 941|Homo sapiens PRP6 pre-mRNA processin... 36 0.17
AL118506-15|CAI21906.1| 941|Homo sapiens PRP6 pre-mRNA processi... 36 0.17
AF221842-1|AAF66128.1| 941|Homo sapiens U5 snRNP-associated 102... 36 0.17
AF026031-1|AAD01798.1| 941|Homo sapiens putative mitochondrial ... 36 0.17
AB019219-1|BAA37140.1| 941|Homo sapiens protein ( Homo sapiens ... 36 0.17
BC018466-1|AAH18466.1| 735|Homo sapiens EXOC7 protein protein. 33 0.68
BC011045-1|AAH11045.1| 684|Homo sapiens exocyst complex compone... 33 0.68
AK023832-1|BAB14694.1| 653|Homo sapiens protein ( Homo sapiens ... 33 0.68
AK022397-1|BAB14026.1| 283|Homo sapiens protein ( Homo sapiens ... 33 0.68
AB028990-1|BAA83019.1| 690|Homo sapiens KIAA1067 protein protein. 33 0.68
>BC004819-1|AAH04819.1| 172|Homo sapiens pallidin homolog (mouse)
protein.
Length = 172
Score = 44.8 bits (101), Expect = 3e-04
Identities = 25/95 (26%), Positives = 45/95 (47%)
Frame = +1
Query: 73 KTCNLLAKGILELYEPPLTTINTHLKELTEKQDAIHNTIKFERQKLEDIQNXXXXXXXXX 252
K LA+G+L Y P L L+ELT+ Q + +T++ E K ++ +
Sbjct: 47 KAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFA 106
Query: 253 XIATNREKLLTISNSMMVLHKRVQSLQVRAANVEK 357
KL+ I M++LH++ L+ RA +++
Sbjct: 107 EAKHYHAKLVNIRKEMLMLHEKTSKLKKRALKLQQ 141
>AF080470-1|AAF08343.1| 172|Homo sapiens pallid protein.
Length = 172
Score = 44.8 bits (101), Expect = 3e-04
Identities = 25/95 (26%), Positives = 45/95 (47%)
Frame = +1
Query: 73 KTCNLLAKGILELYEPPLTTINTHLKELTEKQDAIHNTIKFERQKLEDIQNXXXXXXXXX 252
K LA+G+L Y P L L+ELT+ Q + +T++ E K ++ +
Sbjct: 47 KAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFA 106
Query: 253 XIATNREKLLTISNSMMVLHKRVQSLQVRAANVEK 357
KL+ I M++LH++ L+ RA +++
Sbjct: 107 EAKHYHAKLVNIRKEMLMLHEKTSKLKKRALKLQQ 141
>BC001666-1|AAH01666.1| 941|Homo sapiens PRP6 pre-mRNA processing
factor 6 homolog (S. cerevisiae) protein.
Length = 941
Score = 35.5 bits (78), Expect = 0.17
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 25 DRNTMENTEKADLNDAKTCNLLAKGILEL--YEPPLTTINTHLKELTEKQDAIHNTI 189
D N+M T D+ND K LL K + E + PP + L+E+T K N I
Sbjct: 276 DLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLI 332
>AL356790-1|CAH71582.1| 941|Homo sapiens PRP6 pre-mRNA processing
factor 6 homolog (S. cerevisiae) protein.
Length = 941
Score = 35.5 bits (78), Expect = 0.17
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 25 DRNTMENTEKADLNDAKTCNLLAKGILEL--YEPPLTTINTHLKELTEKQDAIHNTI 189
D N+M T D+ND K LL K + E + PP + L+E+T K N I
Sbjct: 276 DLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLI 332
>AL355803-2|CAC16610.2| 941|Homo sapiens PRP6 pre-mRNA processing
factor 6 homolog (S. cerevisiae) protein.
Length = 941
Score = 35.5 bits (78), Expect = 0.17
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 25 DRNTMENTEKADLNDAKTCNLLAKGILEL--YEPPLTTINTHLKELTEKQDAIHNTI 189
D N+M T D+ND K LL K + E + PP + L+E+T K N I
Sbjct: 276 DLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLI 332
>AL118506-15|CAI21906.1| 941|Homo sapiens PRP6 pre-mRNA processing
factor 6 homolog (S. cerevisiae) protein.
Length = 941
Score = 35.5 bits (78), Expect = 0.17
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 25 DRNTMENTEKADLNDAKTCNLLAKGILEL--YEPPLTTINTHLKELTEKQDAIHNTI 189
D N+M T D+ND K LL K + E + PP + L+E+T K N I
Sbjct: 276 DLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLI 332
>AF221842-1|AAF66128.1| 941|Homo sapiens U5 snRNP-associated 102
kDa protein protein.
Length = 941
Score = 35.5 bits (78), Expect = 0.17
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 25 DRNTMENTEKADLNDAKTCNLLAKGILEL--YEPPLTTINTHLKELTEKQDAIHNTI 189
D N+M T D+ND K LL K + E + PP + L+E+T K N I
Sbjct: 276 DLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLI 332
>AF026031-1|AAD01798.1| 941|Homo sapiens putative mitochondrial
outer membrane protein import receptor protein.
Length = 941
Score = 35.5 bits (78), Expect = 0.17
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 25 DRNTMENTEKADLNDAKTCNLLAKGILEL--YEPPLTTINTHLKELTEKQDAIHNTI 189
D N+M T D+ND K LL K + E + PP + L+E+T K N I
Sbjct: 276 DLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLI 332
>AB019219-1|BAA37140.1| 941|Homo sapiens protein ( Homo sapiens
mRNA, complete cds, similar to yeast pre-mRNA splicing
factors, Prp1/Zer1 and Prp6. ).
Length = 941
Score = 35.5 bits (78), Expect = 0.17
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 25 DRNTMENTEKADLNDAKTCNLLAKGILEL--YEPPLTTINTHLKELTEKQDAIHNTI 189
D N+M T D+ND K LL K + E + PP + L+E+T K N I
Sbjct: 276 DLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLI 332
>BC018466-1|AAH18466.1| 735|Homo sapiens EXOC7 protein protein.
Length = 735
Score = 33.5 bits (73), Expect = 0.68
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +1
Query: 148 KELTEKQDAIHNTIKFERQKLEDIQNXXXXXXXXXXIATNREKLLTISNSMMVLHKRVQS 327
+E+ +K T+ F R LE ++ +++ +L+ + NS++ +HK+ ++
Sbjct: 12 REIEDKLKQEEETLSFIRDSLE--KSDQLTKNMVSILSSFESRLMKLENSIIPVHKQTEN 69
Query: 328 LQVRAANVEK 357
LQ NVEK
Sbjct: 70 LQRLQENVEK 79
>BC011045-1|AAH11045.1| 684|Homo sapiens exocyst complex component
7 protein.
Length = 684
Score = 33.5 bits (73), Expect = 0.68
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +1
Query: 148 KELTEKQDAIHNTIKFERQKLEDIQNXXXXXXXXXXIATNREKLLTISNSMMVLHKRVQS 327
+E+ +K T+ F R LE ++ +++ +L+ + NS++ +HK+ ++
Sbjct: 12 REIEDKLKQEEETLSFIRDSLE--KSDQLTKNMVSILSSFESRLMKLENSIIPVHKQTEN 69
Query: 328 LQVRAANVEK 357
LQ NVEK
Sbjct: 70 LQRLQENVEK 79
>AK023832-1|BAB14694.1| 653|Homo sapiens protein ( Homo sapiens
cDNA FLJ13770 fis, clone PLACE4000269, highly similar to
Rattus norvegicus rexo70 mRNA. ).
Length = 653
Score = 33.5 bits (73), Expect = 0.68
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +1
Query: 148 KELTEKQDAIHNTIKFERQKLEDIQNXXXXXXXXXXIATNREKLLTISNSMMVLHKRVQS 327
+E+ +K T+ F R LE ++ +++ +L+ + NS++ +HK+ ++
Sbjct: 12 REIEDKLKQEEETLSFIRDSLE--KSDQLTKNMVSILSSFESRLMKLENSIIPVHKQTEN 69
Query: 328 LQVRAANVEK 357
LQ NVEK
Sbjct: 70 LQRLQENVEK 79
>AK022397-1|BAB14026.1| 283|Homo sapiens protein ( Homo sapiens
cDNA FLJ12335 fis, clone MAMMA1002219, highly similar to
Rattus norvegicus rexo70 mRNA. ).
Length = 283
Score = 33.5 bits (73), Expect = 0.68
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +1
Query: 148 KELTEKQDAIHNTIKFERQKLEDIQNXXXXXXXXXXIATNREKLLTISNSMMVLHKRVQS 327
+E+ +K T+ F R LE ++ +++ +L+ + NS++ +HK+ ++
Sbjct: 12 REIEDKLKQEEETLSFIRDSLE--KSDQLTKNMVSILSSFESRLMKLENSIIPVHKQTEN 69
Query: 328 LQVRAANVEK 357
LQ NVEK
Sbjct: 70 LQRLQENVEK 79
>AB028990-1|BAA83019.1| 690|Homo sapiens KIAA1067 protein protein.
Length = 690
Score = 33.5 bits (73), Expect = 0.68
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +1
Query: 148 KELTEKQDAIHNTIKFERQKLEDIQNXXXXXXXXXXIATNREKLLTISNSMMVLHKRVQS 327
+E+ +K T+ F R LE ++ +++ +L+ + NS++ +HK+ ++
Sbjct: 18 REIEDKLKQEEETLSFIRDSLE--KSDQLTKNMVSILSSFESRLMKLENSIIPVHKQTEN 75
Query: 328 LQVRAANVEK 357
LQ NVEK
Sbjct: 76 LQRLQENVEK 85
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,634,845
Number of Sequences: 237096
Number of extensions: 1973697
Number of successful extensions: 3364
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3364
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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