Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b15f
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f...    29   3.6  
At5g58580.1 68418.m07341 zinc finger (C3HC4-type RING finger) fa...    27   8.3  
At5g48385.1 68418.m05980 expressed protein                             27   8.3  

>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 631

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 442 NK*VLPCAVINA-NIFYANILFLLLRWIDELTAHLVLSGY 558
           N  + PC ++N  N  +AN++   L W   L A+L+  G+
Sbjct: 162 NPELAPCGLMNCGNSCFANVILQCLSWTRPLVAYLLEKGH 201


>At5g58580.1 68418.m07341 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 308

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 472 NANIFYANILFLLLRWIDELTAHLVLSGYWSP 567
           N+N+  A ++FLLL  +  L  H     +WSP
Sbjct: 26  NSNVLLAALVFLLLVVLFVLLLHFYARFFWSP 57


>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +1

Query: 37  MENTEK-ADLNDAKTCNL--LAKGILELYEPPLTTINTHLKELTEKQDAIHNTIKFERQK 207
           ME+T   A L D+ +  +  L K   EL      T+N   KEL E    +  ++K    +
Sbjct: 1   MEDTRSVASLMDSTSSKIQQLQKAFAELESQRAVTLNLKWKELEEHFHGLERSLKRRFHE 60

Query: 208 LED 216
           LED
Sbjct: 61  LED 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,799,736
Number of Sequences: 28952
Number of extensions: 269563
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)