Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b14r
(707 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC071853-1|AAH71853.1| 356|Homo sapiens GREB1 protein protein. 33 1.3
AL135793-9|CAI95134.1| 2948|Homo sapiens transforming, acidic co... 33 1.3
AL135793-7|CAI95132.1| 2675|Homo sapiens transforming, acidic co... 33 1.3
AF528099-1|AAO62630.1| 2948|Homo sapiens transforming acidic coi... 33 1.3
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein. 32 1.7
AK092754-1|BAC03965.1| 615|Homo sapiens protein ( Homo sapiens ... 31 5.3
BC032587-1|AAH32587.1| 442|Homo sapiens tubby like protein 3 pr... 30 9.3
AF045583-1|AAC95431.1| 442|Homo sapiens tubby like protein 3 pr... 30 9.3
>BC071853-1|AAH71853.1| 356|Homo sapiens GREB1 protein protein.
Length = 356
Score = 32.7 bits (71), Expect = 1.3
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 409 KCRELKSSALTSVTRPEKLMMSDAPGGLQEPA--*PSRRRGSAALNNSPISLNKFEITMS 582
KC++L + L ++ RP L S PG +PA R G A P+SL + ++
Sbjct: 275 KCQQLAKNNLLALPRPSALGSSACPGRPGDPALLWAKARGGMGAAGLGPLSLLESDVASM 334
Query: 583 RMR 591
R+R
Sbjct: 335 RVR 337
>AL135793-9|CAI95134.1| 2948|Homo sapiens transforming, acidic
coiled-coil containing protein 2 protein.
Length = 2948
Score = 32.7 bits (71), Expect = 1.3
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 121 LTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTM-MLSARETEAVASATTFSRASPPEAKDL 297
L+ PTS P ++W LT ++AP + L + E SR SPP A L
Sbjct: 910 LSDTPTSSPTDMVWESSLTEESELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVL 969
Query: 298 R 300
+
Sbjct: 970 K 970
>AL135793-7|CAI95132.1| 2675|Homo sapiens transforming, acidic
coiled-coil containing protein 2 protein.
Length = 2675
Score = 32.7 bits (71), Expect = 1.3
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 121 LTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTM-MLSARETEAVASATTFSRASPPEAKDL 297
L+ PTS P ++W LT ++AP + L + E SR SPP A L
Sbjct: 637 LSDTPTSSPTDMVWESSLTEESELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVL 696
Query: 298 R 300
+
Sbjct: 697 K 697
>AF528099-1|AAO62630.1| 2948|Homo sapiens transforming acidic coiled
coil 2, long isoform protein.
Length = 2948
Score = 32.7 bits (71), Expect = 1.3
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 121 LTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTM-MLSARETEAVASATTFSRASPPEAKDL 297
L+ PTS P ++W LT ++AP + L + E SR SPP A L
Sbjct: 910 LSDTPTSSPTDMVWESSLTEESELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVL 969
Query: 298 R 300
+
Sbjct: 970 K 970
>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
Length = 1349
Score = 32.3 bits (70), Expect = 1.7
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 3/144 (2%)
Frame = +1
Query: 124 TAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRT 303
T TS P +TS I+AP + T S +T ++S TT + +P +
Sbjct: 748 TTNTTSAPTTSTTSAPITS--TISAPTTSTT--STPQTSTISSPTTSTTPTPQTSTTSSP 803
Query: 304 RLKMRISPSAEPTDA---ETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMS 474
+P+ T A T T +T +S PT T SA T+ T +
Sbjct: 804 TTSTTSAPTTSTTSAPTTSTTSTPQTSISSAPTSSTTSAPTASTISAPTTSTTSFHTTST 863
Query: 475 DAPGGLQEPA*PSRRRGSAALNNS 546
+P + P + SAA +++
Sbjct: 864 TSPPTSSTSSTPQTSKTSAATSST 887
>AK092754-1|BAC03965.1| 615|Homo sapiens protein ( Homo sapiens
cDNA FLJ35435 fis, clone SMINT2002620. ).
Length = 615
Score = 30.7 bits (66), Expect = 5.3
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 241 AVASATTFSRASPPEAKDLRTRLKMRISP---SAEPTDAETLGTARTKLSRVP 390
A ++F R S DLRT R+ S+ TD++ LG+ RTK R P
Sbjct: 259 AFLKKSSFKRKSTSNLADLRTAHDARVPQRTLSSSSTDSQKLGSGRTKRWRSP 311
>BC032587-1|AAH32587.1| 442|Homo sapiens tubby like protein 3
protein.
Length = 442
Score = 29.9 bits (64), Expect = 9.3
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = -1
Query: 623 HRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRDGYAGSWSPPGASDIINFSGRVT 444
H+ + ++P + D ++S N E L + A W+ S ++NF GRVT
Sbjct: 332 HKQIPYQPQNNH--DSLLSRWQNRTMENL-----VELHNKAPVWNSDTQSYVLNFRGRVT 384
Query: 443 DVKADDFSSLHLRRVSYV 390
+F +H Y+
Sbjct: 385 QASVKNFQIVHKNDPDYI 402
>AF045583-1|AAC95431.1| 442|Homo sapiens tubby like protein 3
protein.
Length = 442
Score = 29.9 bits (64), Expect = 9.3
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = -1
Query: 623 HRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRDGYAGSWSPPGASDIINFSGRVT 444
H+ + ++P + D ++S N E L + A W+ S ++NF GRVT
Sbjct: 332 HKQIPYQPQNNH--DSLLSRWQNRTMENL-----VELHNKAPVWNSDTQSYVLNFRGRVT 384
Query: 443 DVKADDFSSLHLRRVSYV 390
+F +H Y+
Sbjct: 385 QASVKNFQLVHKNDPDYI 402
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,873,119
Number of Sequences: 237096
Number of extensions: 1748725
Number of successful extensions: 4907
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4902
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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